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BaseInfo

ncRNA ID novel_bna_miR194
Species Brassica napus
Class miRNA
Genome position ChrA10:12243589-12243702 [-]
Reference genome Brassica_napus_assembly_v1.0
Source SRR527232
Length 21
Mature sequence(if miRNA) 94 - AUACUCUAUAUUUUACUCUAU - 114
Stem-loop(if miRNA) ----AUA                 UU                       GAACCAUUA
       CUCUAUAUUUUACUCUA  AUAGAGUAAUUCUAUUAUAGAGU         G
       |||||||||||||||||  |||||||||||||||||||||||
       GAGAUAUAAAGUGAGAU  UAUCUCAUUGAGAUAAUAUCUCA         A
AUUAAAA                 UU                       AUUUAAACG
Stem-loop sequence AUACUCUAUAUUUUACUCUAUUAUAGAGUAAUUCUAUUAUAGAGUGAACCAUUAGAGCAAAUUUAACUCUAUAAUAGAGUUACUCUAUUUUAGAGUGAAAUAUAGAGAAAAUUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_013890437.1
ncRNA:21   UAUCUCAUUUUAUAUCUCAUA   1
  ||||||*||||||||||*|||
targets:883   AUAGAGAAAAAUAUAGAAUAU   903

2.5 PREDICTED: Brassica napus putative F-box protein At1g47790 (LOC106448571), mRNA putative F-box protein At1g47790(LOC106448571) coding protein psRNATarget