Search result

BaseInfo

ncRNA ID	novel_bna_miR190
Species	Brassica napus
Class	miRNA
Genome position	ChrC4:370734-370812 [+]
Reference genome	Brassica_napus_assembly_v1.0
Source	SRR527232;SRR527228
Length	21
Mature sequence(if miRNA)	59 - UUAGAUUCACGCACAAACUCG - 79
Stem-loop(if miRNA)	-UGU                     UAUUCU  -U    U     UUUGUGCGUGAAUCUAAUUCA      CA  GUAG A     |||||||||||||||||||||      ||  |||| A     AAACACGCACUUAGAUUAGGU      GU  UAUC U GCUC                     --UGUU  UC    C
Stem-loop sequence	UGUUUUGUGCGUGAAUCUAAUUCAUAUUCUCAUGUAGUAAUCCUAUCUUGUUGUUGGAUUAGAUUCACGCACAAACUCG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_013872841.1	ncRNA:21   GCUCAAACACGCACUUAGAUU   1   *|||||||||||||||||||| targets:1462   GGAGUUUGUGCGUGAAUCUAA   1482 Target Full Sequence	0.0	PREDICTED: Brassica napus protein argonaute 2-like (LOC106432003), mRNA	protein argonaute 2-like(LOC106432003)	coding protein	psRNATarget
XM_013887347.1	ncRNA:21   GCUCAAACACGCACUUAGAUU   1   *|||||||||||||||||||| targets:3237   GGAGUUUGUGCGUGAAUCUAA   3257 Target Full Sequence	0.0	PREDICTED: Brassica napus protein argonaute 2-like (LOC106445727), transcript variant X4, mRNA	protein argonaute 2-like(LOC106445727)	coding protein	psRNATarget
XM_013887343.1	ncRNA:21   GCUCAAACACGCACUUAGAUU   1   *|||||||||||||||||||| targets:3240   GGAGUUUGUGCGUGAAUCUAA   3260 Target Full Sequence	0.0	PREDICTED: Brassica napus protein argonaute 2-like (LOC106445727), transcript variant X1, mRNA	protein argonaute 2-like(LOC106445727)	coding protein	psRNATarget
XM_013887346.1	ncRNA:21   GCUCAAACACGCACUUAGAUU   1   *|||||||||||||||||||| targets:3240   GGAGUUUGUGCGUGAAUCUAA   3260 Target Full Sequence	0.0	PREDICTED: Brassica napus protein argonaute 2-like (LOC106445727), transcript variant X3, mRNA	protein argonaute 2-like(LOC106445727)	coding protein	psRNATarget
XM_013887345.1	ncRNA:21   GCUCAAACACGCACUUAGAUU   1   *|||||||||||||||||||| targets:3240   GGAGUUUGUGCGUGAAUCUAA   3260 Target Full Sequence	0.0	PREDICTED: Brassica napus protein argonaute 2-like (LOC106445727), transcript variant X2, mRNA	protein argonaute 2-like(LOC106445727)	coding protein	psRNATarget
XM_013842146.1	ncRNA:21   GCUCAAACACGCACUUAGAUU   1   *|||||||||||||||||||| targets:3341   GGAGUUUGUGCGUGAAUCUAA   3361 Target Full Sequence	0.0	PREDICTED: Brassica napus protein argonaute 2-like (LOC106401604), mRNA	protein argonaute 2-like(LOC106401604)	coding protein	psRNATarget
XM_013887832.1	ncRNA:21   GCUCAAACACGCACUUAGAUU   1   *|||||||||||||||||||| targets:3344   GGAGUUUGUGCGUGAAUCUAA   3364 Target Full Sequence	0.0	PREDICTED: Brassica napus protein argonaute 2-like (LOC106446146), mRNA	protein argonaute 2-like(LOC106446146)	coding protein	psRNATarget
XM_013789098.1	ncRNA:21   GCUCAAACACGCACUUAGAUU   1   *|||||||||||||||||||| targets:3363   GGAGUUUGUGCGUGAAUCUAA   3383 Target Full Sequence	0.0	PREDICTED: Brassica napus protein argonaute 2-like (LOC106349171), transcript variant X1, mRNA	protein argonaute 2-like(LOC106349171)	coding protein	psRNATarget
XM_013854735.1	ncRNA:21   GCUCAAACACGCACUUAGAUU   1   *||||||||||*||||||||= targets:802   GGAGUUUGUGCCUGAAUCUAG   822 Target Full Sequence	2.5	PREDICTED: Brassica napus uncharacterized LOC106414017 (LOC106414017), mRNA	uncharacterized LOC106414017(LOC106414017)	coding protein	psRNATarget