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BaseInfo

ncRNA ID novel_bna_miR188
Species Brassica napus
Class miRNA
Genome position ChrC2:17277203-17277380 [-]
Reference genome Brassica_napus_assembly_v1.0
Source SRR527232;SRR537605;SRR538067;SRR521271
Length 21
Mature sequence(if miRNA) 1 - UUUGGAUUGAAGGGAGCUCUA - 21
Stem-loop(if miRNA) --         CA        C      -UU   ------       AGA      G  A  C    G UC     -    CU A    AAAA
  GAGCUCCUU  AGUUCAAA GAGAGU   AGC      AGGGUAA   AAAGCU CU AG UAUG A  CCAUA AGCC  A CCUU    U
  |||||||||  |||||||| ||||||   |||      |||||||   |||||| || || |||| |  ||||| ||||  | ||||
  CUCGAGGGA  UUAGGUUU UUCUCA   UCG      UCCCGUU   UUUCGA GA UC AUAC U  GGUAU UCGG  U GGAA    A
AU         AG        C      UUU   GUAAUU       CAA      G  C  U    G UC     G    UU A    AAAG
Stem-loop sequence GAGCUCCUUCAAGUUCAAACGAGAGUUUAGCAGGGUAAAGAAAAGCUGCUAAGCUAUGGAUCCCAUAAGCCCUAACCUUAAAAUAGAAAAAGGAUUUGGCUGUAUGGCUUGCAUAUCUCAGGAGCUUUAACUUGCCCUUUAAUGGCUUUUACUCUUCUUUGGAUUGAAGGGAGCUCUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_013859253.1
ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1
  *||||||||||||||*|||||
targets:1109   AAGAGCUCCCUUCAAACCAAA   1129

1.5 PREDICTED: Brassica napus transcription factor MYB28-like (LOC106418525), mRNA transcription factor MYB28-like(LOC106418525) coding protein psRNATarget
XM_013868384.1
ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1
  |||||||=|||||||*|||||
targets:884   UAGAGCUUCCUUCAAACCAAA   904

2.5 PREDICTED: Brassica napus transcription factor GAMYB-like (LOC106427664), mRNA transcription factor GAMYB-like(LOC106427664) coding protein psRNATarget
KR076552.1
ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1
  |=||||||||||||*|||||*
targets:875   UGGAGCUCCCUUCAUUCCAAU   895

2.5 Brassica napus MYB transcription factor 81-2 (MYB81-2.1) mRNA, complete cds NA coding protein psRNATarget
XM_013809665.1
ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1
  *||||=|||||||||*|||||
targets:740   AAGAGUUCCCUUCAAACCAAA   760

2.5 PREDICTED: Brassica napus hybrid signal transduction histidine kinase A-like (LOC106369519), mRNA hybrid signal transduction histidine kinase A-like(LOC106369519) coding protein psRNATarget
XM_013876648.1
ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1
  |=||||||||||||*|||||*
targets:977   UGGAGCUCCCUUCAUUCCAAU   997

2.5 PREDICTED: Brassica napus transcription factor GAMYB-like (LOC106435733), transcript variant X3, mRNA transcription factor GAMYB-like(LOC106435733) coding protein psRNATarget
XM_013876646.1
ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1
  |=||||||||||||*|||||*
targets:1093   UGGAGCUCCCUUCAUUCCAAU   1113

2.5 PREDICTED: Brassica napus transcription factor GAMYB-like (LOC106435733), transcript variant X2, mRNA transcription factor GAMYB-like(LOC106435733) coding protein psRNATarget
XM_013809700.1
ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1
  *||||=|||||||||*|||||
targets:1091   AAGAGUUCCCUUCAAACCAAA   1111

2.5 PREDICTED: Brassica napus transcription factor MYB26-like (LOC106369561), mRNA transcription factor MYB26-like(LOC106369561) coding protein psRNATarget
XM_013879558.1
ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1
  |=||||||||||||*|||||*
targets:1023   UGGAGCUCCCUUCAUUCCAAU   1043

2.5 PREDICTED: Brassica napus transcription factor MYB104-like (LOC106438414), transcript variant X3, mRNA transcription factor MYB104-like(LOC106438414) coding protein psRNATarget
XM_013849472.1
ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1
  *||||=|||||||||*|||||
targets:1163   AAGAGUUCCCUUCAAACCAAA   1183

2.5 PREDICTED: Brassica napus transcription factor MYB26-like (LOC106408769), mRNA transcription factor MYB26-like(LOC106408769) coding protein psRNATarget
XM_013863608.1
ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1
  |=||||||||||||*|||||*
targets:1053   UGGAGCUCCCUUCAUUCCAAU   1073

2.5 PREDICTED: Brassica napus transcription factor GAMYB-like (LOC106422808), transcript variant X4, mRNA transcription factor GAMYB-like(LOC106422808) coding protein psRNATarget
XM_013876651.1
ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1
  |=||||||||||||*|||||*
targets:1101   UGGAGCUCCCUUCAUUCCAAU   1121

2.5 PREDICTED: Brassica napus transcription factor GAMYB-like (LOC106435733), transcript variant X6, mRNA transcription factor GAMYB-like(LOC106435733) coding protein psRNATarget
XM_013863607.1
ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1
  |=||||||||||||*|||||*
targets:1073   UGGAGCUCCCUUCAUUCCAAU   1093

2.5 PREDICTED: Brassica napus transcription factor GAMYB-like (LOC106422808), transcript variant X3, mRNA transcription factor GAMYB-like(LOC106422808) coding protein psRNATarget
XM_013876650.1
ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1
  |=||||||||||||*|||||*
targets:1101   UGGAGCUCCCUUCAUUCCAAU   1121

2.5 PREDICTED: Brassica napus transcription factor GAMYB-like (LOC106435733), transcript variant X5, mRNA transcription factor GAMYB-like(LOC106435733) coding protein psRNATarget
XM_013876649.1
ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1
  |=||||||||||||*|||||*
targets:1101   UGGAGCUCCCUUCAUUCCAAU   1121

2.5 PREDICTED: Brassica napus transcription factor GAMYB-like (LOC106435733), transcript variant X4, mRNA transcription factor GAMYB-like(LOC106435733) coding protein psRNATarget
XM_013876645.1
ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1
  |=||||||||||||*|||||*
targets:1101   UGGAGCUCCCUUCAUUCCAAU   1121

2.5 PREDICTED: Brassica napus transcription factor GAMYB-like (LOC106435733), transcript variant X1, mRNA transcription factor GAMYB-like(LOC106435733) coding protein psRNATarget
XM_013894677.1
ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1
  |=||||||||||||*|||||*
targets:1115   UGGAGCUCCCUUCAUUCCAAU   1135

2.5 PREDICTED: Brassica napus transcription factor GAMYB (LOC106452529), transcript variant X2, mRNA transcription factor GAMYB(LOC106452529) coding protein psRNATarget
XM_013879555.1
ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1
  |=||||||||||||*|||||*
targets:1266   UGGAGCUCCCUUCAUUCCAAU   1286

2.5 PREDICTED: Brassica napus transcription factor MYB104-like (LOC106438414), transcript variant X1, mRNA transcription factor MYB104-like(LOC106438414) coding protein psRNATarget
XM_013828453.1
ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1
  |=||||||||||||*|||||*
targets:1344   UGGAGCUCCCUUCAUUCCAAU   1364

2.5 PREDICTED: Brassica napus transcription factor MYB104-like (LOC106388396), mRNA transcription factor MYB104-like(LOC106388396) coding protein psRNATarget
XM_013828451.1
ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1
  |=||||||||||||*|||||*
targets:1344   UGGAGCUCCCUUCAUUCCAAU   1364

2.5 PREDICTED: Brassica napus transcription factor MYB104-like (LOC106388394), mRNA transcription factor MYB104-like(LOC106388394) coding protein psRNATarget
XM_013879650.1
ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1
  |=||||||||||||*|||||*
targets:1344   UGGAGCUCCCUUCAUUCCAAU   1364

2.5 PREDICTED: Brassica napus transcription factor MYB104-like (LOC106438484), mRNA transcription factor MYB104-like(LOC106438484) coding protein psRNATarget
XM_013879557.1
ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1
  |=||||||||||||*|||||*
targets:1478   UGGAGCUCCCUUCAUUCCAAU   1498

2.5 PREDICTED: Brassica napus transcription factor MYB104-like (LOC106438414), transcript variant X2, mRNA transcription factor MYB104-like(LOC106438414) coding protein psRNATarget
XM_013894678.1
ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1
  |=||||||||||||*|||||*
targets:1568   UGGAGCUCCCUUCAUUCCAAU   1588

2.5 PREDICTED: Brassica napus transcription factor GAMYB (LOC106452529), transcript variant X3, mRNA transcription factor GAMYB(LOC106452529) coding protein psRNATarget
XM_013894676.1
ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1
  |=||||||||||||*|||||*
targets:1568   UGGAGCUCCCUUCAUUCCAAU   1588

2.5 PREDICTED: Brassica napus transcription factor GAMYB (LOC106452529), transcript variant X1, mRNA transcription factor GAMYB(LOC106452529) coding protein psRNATarget
XM_013863605.1
ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1
  |=||||||||||||*|||||*
targets:1645   UGGAGCUCCCUUCAUUCCAAU   1665

2.5 PREDICTED: Brassica napus transcription factor GAMYB-like (LOC106422808), transcript variant X1, mRNA transcription factor GAMYB-like(LOC106422808) coding protein psRNATarget
XM_013863606.1
ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1
  |=||||||||||||*|||||*
targets:1645   UGGAGCUCCCUUCAUUCCAAU   1665

2.5 PREDICTED: Brassica napus transcription factor GAMYB-like (LOC106422808), transcript variant X2, mRNA transcription factor GAMYB-like(LOC106422808) coding protein psRNATarget
XM_013863609.1
ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1
  |=||||||||||||*|||||*
targets:1645   UGGAGCUCCCUUCAUUCCAAU   1665

2.5 PREDICTED: Brassica napus transcription factor GAMYB-like (LOC106422808), transcript variant X5, mRNA transcription factor GAMYB-like(LOC106422808) coding protein psRNATarget
XM_013876422.1
ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1
  ||||||*||||||||*|||||
targets:489   UAGAGCCCCCUUCAAACCAAA   509

2.5 PREDICTED: Brassica napus uncharacterized LOC106435524 (LOC106435524), partial mRNA uncharacterized LOC106435524(LOC106435524) coding protein psRNATarget
XM_013825691.1
ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1
  ||||||*||||||||*|||||
targets:627   UAGAGCCCCCUUCAAACCAAA   647

2.5 PREDICTED: Brassica napus uncharacterized LOC106385789 (LOC106385789), transcript variant X2, mRNA uncharacterized LOC106385789(LOC106385789) coding protein psRNATarget
XM_013825690.1
ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1
  ||||||*||||||||*|||||
targets:627   UAGAGCCCCCUUCAAACCAAA   647

2.5 PREDICTED: Brassica napus uncharacterized LOC106385789 (LOC106385789), transcript variant X1, mRNA uncharacterized LOC106385789(LOC106385789) coding protein psRNATarget
XM_013885042.1
ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1
  ||||||*||||||||*|||||
targets:660   UAGAGCCCCCUUCAAACCAAA   680

2.5 PREDICTED: Brassica napus uncharacterized LOC106443481 (LOC106443481), mRNA uncharacterized LOC106443481(LOC106443481) coding protein psRNATarget
XM_013791371.1
ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1
  *|||*||||||||||*|||||
targets:1139   AAGACCUCCCUUCAAACCAAA   1159

2.5 PREDICTED: Brassica napus transcription factor MYB26-like (LOC106351590), mRNA transcription factor MYB26-like(LOC106351590) coding protein psRNATarget
XM_013790894.1
ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1
  *|||*||||||||||*|||||
targets:1148   AAGACCUCCCUUCAAACCAAA   1168

2.5 PREDICTED: Brassica napus myb-like protein A (LOC106351074), mRNA myb-like protein A(LOC106351074) coding protein psRNATarget
XM_013790193.1
ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1
  *=*|||||||*||||||||||
targets:276   CGAAGCUCCCCUCAAUCCAAA   296

2.5 PREDICTED: Brassica napus actin-1-like (LOC106350285), mRNA actin-1-like(LOC106350285) coding protein psRNATarget
XM_013847653.1
ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1
  *=*|||||||*||||||||||
targets:324   CGAAGCUCCCCUCAAUCCAAA   344

2.5 PREDICTED: Brassica napus actin-12-like (LOC106406909), mRNA actin-12-like(LOC106406909) coding protein psRNATarget
XM_013787297.1
ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1
  *=*|||||||*||||||||||
targets:492   CGAAGCUCCCCUCAAUCCAAA   512

2.5 PREDICTED: Brassica napus actin-12 (LOC106347709), mRNA actin-12(LOC106347709) coding protein psRNATarget
XM_013823447.1
ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1
  ***||||=||||||||||||*
targets:1621   AUCAGCUUCCUUCAAUCCAAC   1641

3.0 PREDICTED: Brassica napus uncharacterized LOC106383332 (LOC106383332), mRNA uncharacterized LOC106383332(LOC106383332) coding protein psRNATarget
XM_013819110.1
ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1
  ***||||=||||||||||||*
targets:2575   AUUAGCUUCCUUCAAUCCAAC   2595

3.0 PREDICTED: Brassica napus uncharacterized LOC106379093 (LOC106379093), mRNA uncharacterized LOC106379093(LOC106379093) coding protein psRNATarget
XM_013844780.1
ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1
  ***||||=||||||||||||*
targets:2575   AUUAGCUUCCUUCAAUCCAAC   2595

3.0 PREDICTED: Brassica napus uncharacterized LOC106404017 (LOC106404017), mRNA uncharacterized LOC106404017(LOC106404017) coding protein psRNATarget
XM_013819109.1
ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1
  ***||||=||||||||||||*
targets:2701   AUCAGCUUCCUUCAAUCCAAC   2721

3.0 PREDICTED: Brassica napus uncharacterized LOC106379092 (LOC106379092), mRNA uncharacterized LOC106379092(LOC106379092) coding protein psRNATarget
XM_013816148.1
ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1
  *|*|*||=|||||||||||||
targets:87   AACAACUUCCUUCAAUCCAAA   107

3.0 PREDICTED: Brassica napus uncharacterized LOC106376070 (LOC106376070), mRNA uncharacterized LOC106376070(BNAA01G06260D) coding protein psRNATarget
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