Search result

BaseInfo

ncRNA ID	novel_bna_miR185
Species	Brassica napus
Class	miRNA
Genome position	ChrA9:10033583-10033660 [-]
Reference genome	Brassica_napus_assembly_v1.0
Source	SRR527232;SRR527233
Length	22
Mature sequence(if miRNA)	1 - UCUGCUGGUCGUUCCAUGUUAA - 22
Stem-loop(if miRNA)	--          -    A        G   -  UG   GA   AACAUGGAGC AUCA CAGAUCUC GAG CA  UAA  U   |||||||||| |||| |||||||| ||| ||  |||   UUGUACCUUG UGGU GUCUAGGG CUC GU  GUU  C AA          C    C        G   U  UU   GU
Stem-loop sequence	AACAUGGAGCAUCAACAGAUCUCGGAGCAUGUAAGAUCUGUUGUUUGUCUCGGGGAUCUGCUGGUCGUUCCAUGUUAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_013801696.1	ncRNA:22   AAUUGUACCUUGCUGGUCGUCU   1   |*||||||||*||||||||||* targets:79   UAAACAUGGACCGACCAGCAGU   100 Target Full Sequence	2.5	PREDICTED: Brassica napus serine/threonine-protein kinase SRK2E-like (LOC106361852), transcript variant X1, mRNA	serine/threonine-protein kinase SRK2E-like(LOC106361852)	coding protein	psRNATarget
XM_013810609.1	ncRNA:22   AAUUGUACCUUGCUGGUCGUCU   1   |*||||||||*||||||||||* targets:322   UAAACAUGGACCGACCAGCAGU   343 Target Full Sequence	2.5	PREDICTED: Brassica napus serine/threonine-protein kinase SRK2E (LOC106370611), mRNA	serine/threonine-protein kinase SRK2E(LOC106370611)	coding protein	psRNATarget
XM_013879760.1	ncRNA:22   AAUUGUACCUUGCUGGUCGUCU   1   |*||||||||*||||||||||* targets:358   UAAACAUGGAUCGACCAGCAGU   379 Target Full Sequence	2.5	PREDICTED: Brassica napus serine/threonine-protein kinase SRK2E-like (LOC106438561), transcript variant X2, mRNA	serine/threonine-protein kinase SRK2E-like(LOC106438561)	coding protein	psRNATarget
XM_013801760.1	ncRNA:22   AAUUGUACCUUGCUGGUCGUCU   1   |*||||||||*||||||||||* targets:319   UAAACAUGGACCGACCAGCAGU   340 Target Full Sequence	2.5	PREDICTED: Brassica napus serine/threonine-protein kinase SRK2E-like (LOC106361852), transcript variant X2, mRNA	serine/threonine-protein kinase SRK2E-like(LOC106361852)	coding protein	psRNATarget
XM_013879759.1	ncRNA:22   AAUUGUACCUUGCUGGUCGUCU   1   |*||||||||*||||||||||* targets:357   UAAACAUGGAUCGACCAGCAGU   378 Target Full Sequence	2.5	PREDICTED: Brassica napus serine/threonine-protein kinase SRK2E-like (LOC106438561), transcript variant X1, mRNA	serine/threonine-protein kinase SRK2E-like(LOC106438561)	coding protein	psRNATarget
XM_013800312.1	ncRNA:22   AAUUGUACCUUGCUGGUCGUCU   1   |*||||||||*||||||||||* targets:332   UAAACAUGGACCGACCAGCAGU   353 Target Full Sequence	2.5	PREDICTED: Brassica napus uncharacterized LOC106360672 (LOC106360672), mRNA	uncharacterized LOC106360672(LOC106360672)	coding protein	psRNATarget