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BaseInfo

ncRNA ID novel_bna_miR177
Species Brassica napus
Class miRNA
Genome position ChrA6:1928511-1928575 [+]
Reference genome Brassica_napus_assembly_v1.0
Source SRR527232
Length 20
Mature sequence(if miRNA) 46 - AGGCAGUGACGACUCGGAAA - 65
Stem-loop(if miRNA) --    -    A    --       C   AUAAA
  UUUG GUCG UCAU  CUUUUUC AUU     A
  |||| |||| ||||  ||||||| |||     A
  AGGC CAGC AGUG  GGAAGAG UAG     A
AA    U    -    AC       A   AAAAA
Stem-loop sequence UUUGGUCGAUCAUCUUUUUCCAUUAUAAAAAAAAAAAGAUAGAGAAGGCAGUGACGACUCGGAAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_013843652.1
ncRNA:20   AAAGGCUCAGCAGUGACGGA   1
  ||||||||||*|||||||||
targets:514   UUUCCGAGUCAUCACUGCCU   533

1.5 PREDICTED: Brassica napus U6 snRNA phosphodiesterase-like (LOC106402850), transcript variant X2, mRNA U6 snRNA phosphodiesterase-like(LOC106402850) coding protein psRNATarget