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BaseInfo

ncRNA ID	ath-miRf10561-npr
Species	Arabidopsis thaliana
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	20
Mature sequence(if miRNA)	NA - UUCGUCGCCGUUGUUCGAUC - NA
Stem-loop(if miRNA)	AA    -UUG            AU  ----U      CG  G    A GACG  GAUC    AGCGGUGACGAG  CU     AGCAGC  UA UAGU A ||||  ||||    ||||||||||||  ||     ||||||  || |||| CUGC  CUAG    UUGCCGCUGCUU  GA     UUGUUG  GU GUCG U     CG    CUUG            AU  CCUCC      UU  G    C
Stem-loop sequence	GACGAAGAUCUUGAGCGGUGACGAGAUCUUAGCAGCCGUAGUAGUAAUCGCUGGUGUUGUUGUUCCUCCAGUAUUCGUCGCCGUUGUUCGAUCGCCGUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_119839.6	ncRNA:20   CUAGCUUGUUGCCGCUGCUU   1   |||||||||||||||||||| targets:262   GAUCGAACAACGGCGACGAA   281 Target Full Sequence	0.0	Arabidopsis thaliana Quinone reductase family protein mRNA	Quinone reductase family protein(AT4G36750)	coding protein	psRNATarget
AY087410.1	ncRNA:20   CUAGCUUGUUGCCGCUGCUU   1   |||||||||||||||||||| targets:210   GAUCGAACAACGGCGACGAA   229 Target Full Sequence	0.0	Arabidopsis thaliana clone 35084 mRNA, complete sequence	NA	coding protein	psRNATarget
AY052258.1	ncRNA:20   CUAGCUUGUUGCCGCUGCUU   1   |||||||||||||||||||| targets:165   GAUCGAACAACGGCGACGAA   184 Target Full Sequence	0.0	Arabidopsis thaliana C7A10_610/C7A10_610 mRNA, complete cds	NA	coding protein	psRNATarget
NM_126149.2	ncRNA:20   CUAGCUUGUUGCCGCUGCUU   1   ||||*|||||=||||||||| targets:250   GAUCUAACAAUGGCGACGAA   269 Target Full Sequence	2.5	Arabidopsis thaliana succinate dehydrogenase assembly factor mRNA	succinate dehydrogenase assembly factor(AT5G67490)	coding protein	psRNATarget
BT002831.1	ncRNA:20   CUAGCUUGUUGCCGCUGCUU   1   ||||*|||||=||||||||| targets:19   GAUCUAACAAUGGCGACGAA   38 Target Full Sequence	2.5	Arabidopsis thaliana clone RAFL14-79-M14 (R20239) unknown protein (At5g67490) mRNA, complete cds	NA	coding protein	psRNATarget
BX833638.1	ncRNA:20   CUAGCUUGUUGCCGCUGCUU   1   ||||*|||||=||||||||| targets:5   GAUCUAACAAUGGCGACGAA   24 Target Full Sequence	2.5	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL67ZF07 of Silique of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
AY086451.1	ncRNA:20   CUAGCUUGUUGCCGCUGCUU   1   ||||*|||||=||||||||| targets:46   GAUCUAACAAUGGCGACGAA   65 Target Full Sequence	2.5	Arabidopsis thaliana clone 2518 mRNA, complete sequence	NA	coding protein	psRNATarget
BT020316.1	ncRNA:20   CUAGCUUGUUGCCGCUGCUU   1   ||||*|||||=||||||||| targets:26   GAUCUAACAAUGGCGACGAA   45 Target Full Sequence	2.5	Arabidopsis thaliana At5g67490 gene, complete cds	NA	coding protein	psRNATarget
NM_178954.2	ncRNA:20   CUAGCUUGUUGCCGCUGCUU   1   *=|=*||||||||||||||| targets:411   UGUUCAACAACGGCGACGAA   430 Target Full Sequence	3.0	Arabidopsis thaliana galacturonosyltransferase 6 (GATL6), mRNA	galacturonosyltransferase 6(GATL6)	coding protein	psRNATarget
NM_116445.2	ncRNA:20   CUAGCUUGUUGCCGCUGCUU   1   *=|=*||||||||||||||| targets:585   UGUUCAACAACGGCGACGAA   604 Target Full Sequence	3.0	Arabidopsis thaliana galacturonosyltransferase 6 (GATL6), mRNA	galacturonosyltransferase 6(GATL6)	coding protein	psRNATarget
NM_001036496.1	ncRNA:20   CUAGCUUGUUGCCGCUGCUU   1   *=|=*||||||||||||||| targets:421   UGUUCAACAACGGCGACGAA   440 Target Full Sequence	3.0	Arabidopsis thaliana galacturonosyltransferase 6 (GATL6), mRNA	galacturonosyltransferase 6(GATL6)	coding protein	psRNATarget
AY086171.1	ncRNA:20   CUAGCUUGUUGCCGCUGCUU   1   *=|=*||||||||||||||| targets:421   UGUUCAACAACGGCGACGAA   440 Target Full Sequence	3.0	Arabidopsis thaliana clone 21952 mRNA, complete sequence	NA	coding protein	psRNATarget
AK119044.1	ncRNA:20   CUAGCUUGUUGCCGCUGCUU   1   *=|=*||||||||||||||| targets:411   UGUUCAACAACGGCGACGAA   430 Target Full Sequence	3.0	Arabidopsis thaliana At4g02130 mRNA for putative glycosyl transferase, complete cds, clone: RAFL21-36-O07	NA	coding protein	psRNATarget
AK229344.1	ncRNA:20   CUAGCUUGUUGCCGCUGCUU   1   *=|=*||||||||||||||| targets:374   UGUUCAACAACGGCGACGAA   393 Target Full Sequence	3.0	Arabidopsis thaliana mRNA for glycosyl transferase like protein, complete cds, clone: RAFL16-59-J08	NA	coding protein	psRNATarget
AY090928.1	ncRNA:20   CUAGCUUGUUGCCGCUGCUU   1   *=|=*||||||||||||||| targets:393   UGUUCAACAACGGCGACGAA   412 Target Full Sequence	3.0	Arabidopsis thaliana putative glycosyl transferase (At4g02130) mRNA, partial cds	NA	coding protein	psRNATarget
BT000950.1	ncRNA:20   CUAGCUUGUUGCCGCUGCUU   1   *=|=*||||||||||||||| targets:140   UGUUCAACAACGGCGACGAA   159 Target Full Sequence	3.0	Arabidopsis thaliana clone C105037 putative glycosyl transferase (At4g02130) mRNA, complete cds	NA	coding protein	psRNATarget
KJ138770.1	ncRNA:20   CUAGCUUGUUGCCGCUGCUU   1   *=|=*||||||||||||||| targets:140   UGUUCAACAACGGCGACGAA   159 Target Full Sequence	3.0	Arabidopsis thaliana glycosyltransferase (AT4G02130) mRNA, partial cds	NA	coding protein	psRNATarget