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BaseInfo

ncRNA ID novel_bna_miR150
Species Brassica napus
Class miRNA
Genome position ChrC6:382449-382543 [+]
Reference genome Brassica_napus_assembly_v1.0
Source SRR527231;SRR527233;SRR527236;SRR527228
Length 20
Mature sequence(if miRNA) 1 - UUGGCAUUCUGUCCACCUCC - 20
Stem-loop(if miRNA) --      U C               --U       UU    UA  A U
  UUGGCA U UGUCCACCUCCUUUC   GAAUAUA  UGUG  UA G G
  |||||| | |||||||||||||||   |||||||  ||||  || |
  AACCGU A ACGGGUGGAGGAGAG   UUUGUGU  GCAC  AU C U
AU      C U               UGU       -U    CA  G A
Stem-loop sequence UUGGCAUUCUGUCCACCUCCUUUCUGAAUAUAUUUGUGUAUAAGUGUACGUAACCACGUUGUGUUUUGUGAGAGGAGGUGGGCAUACUGCCAAUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_013797750.1
ncRNA:20   CCUCCACCUGUCUUACGGUU   1
  ||||||*|||||||||||||
targets:1012   GGAGGUUGACAGAAUGCCAA   1031

1.0 PREDICTED: Brassica napus F-box only protein 6-like (LOC106358015), mRNA F-box only protein 6-like(LOC106358015) coding protein psRNATarget
XM_013866187.1
ncRNA:20   CCUCCACCUGUCUUACGGUU   1
  ||||||*|||||||||||||
targets:1246   GGAGGUUGACAGAAUGCCAA   1265

1.0 PREDICTED: Brassica napus F-box only protein 6-like (LOC106425452), mRNA F-box only protein 6-like(LOC106425452) coding protein psRNATarget
XM_013842388.1
ncRNA:20   CCUCCACCUGUCUUACGGUU   1
  ||||||*|||||||||||||
targets:1321   GGAGGUUGACAGAAUGCCAA   1340

1.0 PREDICTED: Brassica napus F-box only protein 6 (LOC106401800), mRNA F-box only protein 6(LOC106401800) coding protein psRNATarget
XM_013807079.1
ncRNA:20   CCUCCACCUGUCUUACGGUU   1
  ||||||*|||||||||||||
targets:1350   GGAGGUUGACAGAAUGCCAA   1369

1.0 PREDICTED: Brassica napus F-box only protein 6-like (LOC106367329), mRNA F-box only protein 6-like(LOC106367329) coding protein psRNATarget
XM_013844249.1
ncRNA:20   CCUCCACCUGUCUUACGGUU   1
  *|||**||||||||||||||
targets:975   UGAGAAGGACAGAAUGCCAA   994

2.0 PREDICTED: Brassica napus putative two-component response regulator-like APRR6 (LOC106403423), mRNA putative two-component response regulator-like APRR6(LOC106403423) coding protein psRNATarget