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BaseInfo

ncRNA ID ath-miRf10560-npr
Species Arabidopsis thaliana
Class miRNA
Genome position NA
Reference genome NA
Source PNRD
Length 21
Mature sequence(if miRNA) NA - UGCACUUCACUGCAGAAGCUG - NA
Stem-loop(if miRNA)     A  AAA              A          --   A   --A      U  U
GCCU AA   GCCAGCUUCUGCAG UGAAGUGCAA  UCG GAG   GAUUUC UC G
|||| ||   |||||||||||||| ||||||||||  ||| |||   |||||| || C
UGGA UU   CGGUCGAAGACGUC ACUUCACGUU  AGC UUC   CUAAGG GG C
    G  --G              -          AC   A   AUG      U  G
Stem-loop sequence GCCUAAAAAAGCCAGCUUCUGCAGAUGAAGUGCAAUCGAGAGAGAUUUCUUCUGCCGGGUGGAAUCGUACUUACGACAUUGCACUUCACUGCAGAAGCUGGCGUUGAGGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BX828433.1
ncRNA:21   GUCGAAGACGUCACUUCACGU   1
  |||||||||||||||||||||
targets:759   CAGCUUCUGCAGUGAAGUGCA   779

0.0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH8ZA12 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
NM_119349.2
ncRNA:21   GUCGAAGACGUCACUUCACGU   1
  |||||||||||||||||||||
targets:1010   CAGCUUCUGCAGUGAAGUGCA   1030

0.0 Arabidopsis thaliana PPPDE thiol peptidase family protein partial mRNA PPPDE thiol peptidase family protein(AT4G31980) coding protein psRNATarget