Search result

BaseInfo

ncRNA ID novel_bna_miR143
Species Brassica napus
Class miRNA
Genome position ChrA10:433312-433425 [+]
Reference genome Brassica_napus_assembly_v1.0
Source SRR527231;SRR527236
Length 20
Mature sequence(if miRNA) 95 - UCGGACCAGGCUUCAUCCCC - 114
Stem-loop(if miRNA) --GA   UU      A         UUA        CAAAUAUGUA        -    UAU
    AUG  GUCUGG UCGAGGAUA   UAUAUACA          UAUAUAUG UUAA   C
    |||  |||||| |||||||||   ||||||||          |||||||| ||||   A
    UAC  CGGACC GGCUCUUAU   AUAUAUGU          AUAUAUAC AGUU   G
CCCC   UU      A         UAG        ----------        U    UGU
Stem-loop sequence GAAUGUUGUCUGGAUCGAGGAUAUUAUAUAUACACAAAUAUGUAUAUAUAUGUUAAUAUCAGUGUUUGAUCAUAUAUAUGUAUAUAGAUUAUUCUCGGACCAGGCUUCAUCCCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_013874871.1
ncRNA:20   CCCCUACUUCGGACCAGGCU   1
  *||||||||||||||||||=
targets:102   UGGGAUGAAGCCUGGUCCGG   121

1.0 PREDICTED: Brassica napus homeobox-leucine zipper protein ATHB-8-like (LOC106434033), mRNA homeobox-leucine zipper protein ATHB-8-like(LOC106434033) coding protein psRNATarget
XM_013874872.1
ncRNA:20   CCCCUACUUCGGACCAGGCU   1
  *||||||||||||||||||=
targets:1001   UGGGAUGAAGCCUGGUCCGG   1020

1.0 PREDICTED: Brassica napus homeobox-leucine zipper protein ATHB-8-like (LOC106434034), mRNA homeobox-leucine zipper protein ATHB-8-like(LOC106434034) coding protein psRNATarget
XM_013804628.1
ncRNA:20   CCCCUACUUCGGACCAGGCU   1
  *||||||||||||||||||=
targets:799   UGGGAUGAAGCCUGGUCCGG   818

1.0 PREDICTED: Brassica napus homeobox-leucine zipper protein ATHB-8 (LOC106365075), transcript variant X2, mRNA homeobox-leucine zipper protein ATHB-8(LOC106365075) coding protein psRNATarget
XM_013804561.1
ncRNA:20   CCCCUACUUCGGACCAGGCU   1
  *||||||||||||||||||=
targets:869   UGGGAUGAAGCCUGGUCCGG   888

1.0 PREDICTED: Brassica napus homeobox-leucine zipper protein ATHB-8 (LOC106365075), transcript variant X1, mRNA homeobox-leucine zipper protein ATHB-8(LOC106365075) coding protein psRNATarget
XM_013815197.1
ncRNA:20   CCCCUACUUCGGACCAGGCU   1
  *||||||||||||||||||=
targets:896   UGGGAUGAAGCCUGGUCCGG   915

1.0 PREDICTED: Brassica napus homeobox-leucine zipper protein ATHB-8-like (LOC106375319), transcript variant X1, mRNA homeobox-leucine zipper protein ATHB-8-like(LOC106375319) coding protein psRNATarget
XM_013815198.1
ncRNA:20   CCCCUACUUCGGACCAGGCU   1
  *||||||||||||||||||=
targets:897   UGGGAUGAAGCCUGGUCCGG   916

1.0 PREDICTED: Brassica napus homeobox-leucine zipper protein ATHB-8-like (LOC106375319), transcript variant X2, mRNA homeobox-leucine zipper protein ATHB-8-like(LOC106375319) coding protein psRNATarget
XM_013889094.1
ncRNA:20   CCCCUACUUCGGACCAGGCU   1
  *||||||||||||||||||=
targets:883   UGGGAUGAAGCCUGGUCCGG   902

1.0 PREDICTED: Brassica napus homeobox-leucine zipper protein ATHB-14-like (LOC106447219), mRNA homeobox-leucine zipper protein ATHB-14-like(LOC106447219) coding protein psRNATarget
XM_013807005.1
ncRNA:20   CCCCUACUUCGGACCAGGCU   1
  *||||||||||||||||||=
targets:827   UGGGAUGAAGCCUGGUCCGG   846

1.0 PREDICTED: Brassica napus homeobox-leucine zipper protein ATHB-9 (LOC106367270), mRNA homeobox-leucine zipper protein ATHB-9(LOC106367270) coding protein psRNATarget
XM_013851839.1
ncRNA:20   CCCCUACUUCGGACCAGGCU   1
  *||||||||||||||||||=
targets:835   UGGGAUGAAGCCUGGUCCGG   854

1.0 PREDICTED: Brassica napus homeobox-leucine zipper protein ATHB-9-like (LOC106411145), mRNA homeobox-leucine zipper protein ATHB-9-like(LOC106411145) coding protein psRNATarget
XM_013811699.1
ncRNA:20   CCCCUACUUCGGACCAGGCU   1
  *||||||||||||||||||=
targets:830   UGGGAUGAAGCCUGGUCCGG   849

1.0 PREDICTED: Brassica napus homeobox-leucine zipper protein REVOLUTA (LOC106371619), transcript variant X2, mRNA homeobox-leucine zipper protein REVOLUTA(LOC106371619) coding protein psRNATarget
XM_013873597.1
ncRNA:20   CCCCUACUUCGGACCAGGCU   1
  *||||||||||||||||||=
targets:884   UGGGAUGAAGCCUGGUCCGG   903

1.0 PREDICTED: Brassica napus homeobox-leucine zipper protein ATHB-14 (LOC106432754), mRNA homeobox-leucine zipper protein ATHB-14(LOC106432754) coding protein psRNATarget
XM_013800819.1
ncRNA:20   CCCCUACUUCGGACCAGGCU   1
  *||||||||||||||||||=
targets:920   UGGGAUGAAGCCUGGUCCGG   939

1.0 PREDICTED: Brassica napus homeobox-leucine zipper protein ATHB-8-like (LOC106361118), transcript variant X1, mRNA homeobox-leucine zipper protein ATHB-8-like(LOC106361118) coding protein psRNATarget
XM_013811700.1
ncRNA:20   CCCCUACUUCGGACCAGGCU   1
  *||||||||||||||||||=
targets:965   UGGGAUGAAGCCUGGUCCGG   984

1.0 PREDICTED: Brassica napus homeobox-leucine zipper protein REVOLUTA (LOC106371619), transcript variant X3, mRNA homeobox-leucine zipper protein REVOLUTA(LOC106371619) coding protein psRNATarget
XM_013811698.1
ncRNA:20   CCCCUACUUCGGACCAGGCU   1
  *||||||||||||||||||=
targets:995   UGGGAUGAAGCCUGGUCCGG   1014

1.0 PREDICTED: Brassica napus homeobox-leucine zipper protein REVOLUTA (LOC106371619), transcript variant X1, mRNA homeobox-leucine zipper protein REVOLUTA(LOC106371619) coding protein psRNATarget
XM_013800820.1
ncRNA:20   CCCCUACUUCGGACCAGGCU   1
  *||||||||||||||||||=
targets:1006   UGGGAUGAAGCCUGGUCCGG   1025

1.0 PREDICTED: Brassica napus homeobox-leucine zipper protein ATHB-8-like (LOC106361118), transcript variant X2, mRNA homeobox-leucine zipper protein ATHB-8-like(LOC106361118) coding protein psRNATarget
XM_013800821.1
ncRNA:20   CCCCUACUUCGGACCAGGCU   1
  *||||||||||||||||||=
targets:1039   UGGGAUGAAGCCUGGUCCGG   1058

1.0 PREDICTED: Brassica napus homeobox-leucine zipper protein ATHB-8-like (LOC106361118), transcript variant X3, mRNA homeobox-leucine zipper protein ATHB-8-like(LOC106361118) coding protein psRNATarget
XM_013825067.1
ncRNA:20   CCCCUACUUCGGACCAGGCU   1
  *||||||||||||||||||=
targets:1191   UGGGAUGAAGCCUGGUCCGG   1210

1.0 PREDICTED: Brassica napus homeobox-leucine zipper protein REVOLUTA-like (LOC106385108), mRNA homeobox-leucine zipper protein REVOLUTA-like(LOC106385108) coding protein psRNATarget
XM_013869322.1
ncRNA:20   CCCCUACUUCGGACCAGGCU   1
  *||*|||||||||||||||=
targets:549   UGGAAUGAAGCCUGGUCCGG   568

2.0 PREDICTED: Brassica napus homeobox-leucine zipper protein ATHB-15-like (LOC106428572), mRNA homeobox-leucine zipper protein ATHB-15-like(LOC106428572) coding protein psRNATarget
XM_013869323.1
ncRNA:20   CCCCUACUUCGGACCAGGCU   1
  *||*|||||||||||||||=
targets:211   UGGAAUGAAGCCUGGUCCGG   230

2.0 PREDICTED: Brassica napus homeobox-leucine zipper protein ATHB-15-like (LOC106428573), mRNA homeobox-leucine zipper protein ATHB-15-like(LOC106428573) coding protein psRNATarget
XM_013787043.1
ncRNA:20   CCCCUACUUCGGACCAGGCU   1
  *||*|||||||||||||||=
targets:400   UGGUAUGAAGCCUGGUCCGG   419

2.0 PREDICTED: Brassica napus homeobox-leucine zipper protein REVOLUTA-like (LOC106347496), transcript variant X3, mRNA homeobox-leucine zipper protein REVOLUTA-like(LOC106347496) coding protein psRNATarget
XM_013787042.1
ncRNA:20   CCCCUACUUCGGACCAGGCU   1
  *||*|||||||||||||||=
targets:985   UGGUAUGAAGCCUGGUCCGG   1004

2.0 PREDICTED: Brassica napus homeobox-leucine zipper protein REVOLUTA-like (LOC106347496), transcript variant X2, mRNA homeobox-leucine zipper protein REVOLUTA-like(LOC106347496) coding protein psRNATarget
XM_013787041.1
ncRNA:20   CCCCUACUUCGGACCAGGCU   1
  *||*|||||||||||||||=
targets:1045   UGGUAUGAAGCCUGGUCCGG   1064

2.0 PREDICTED: Brassica napus homeobox-leucine zipper protein REVOLUTA-like (LOC106347496), transcript variant X1, mRNA homeobox-leucine zipper protein REVOLUTA-like(LOC106347496) coding protein psRNATarget
XM_013837246.1
ncRNA:20   CCCCUACUUCGGACCAGGCU   1
  *||*|||||||||||||||=
targets:1043   UGGUAUGAAGCCUGGUCCGG   1062

2.0 PREDICTED: Brassica napus homeobox-leucine zipper protein ATHB-14 (LOC106396769), mRNA homeobox-leucine zipper protein ATHB-14(LOC106396769) coding protein psRNATarget
XM_013820336.1
ncRNA:20   CCCCUACUUCGGACCAGGCU   1
  *||*|||||||||||||||=
targets:1020   UGGUAUGAAGCCUGGUCCGG   1039

2.0 PREDICTED: Brassica napus homeobox-leucine zipper protein REVOLUTA-like (LOC106380559), transcript variant X2, mRNA homeobox-leucine zipper protein REVOLUTA-like(LOC106380559) coding protein psRNATarget
XM_013784922.1
ncRNA:20   CCCCUACUUCGGACCAGGCU   1
  *||*|||||||||||||||=
targets:1156   UGGAAUGAAGCCUGGUCCGG   1175

2.0 PREDICTED: Brassica napus homeobox-leucine zipper protein ATHB-15 (LOC106345748), transcript variant X2, mRNA homeobox-leucine zipper protein ATHB-15(LOC106345748) coding protein psRNATarget
XM_013784921.1
ncRNA:20   CCCCUACUUCGGACCAGGCU   1
  *||*|||||||||||||||=
targets:1156   UGGAAUGAAGCCUGGUCCGG   1175

2.0 PREDICTED: Brassica napus homeobox-leucine zipper protein ATHB-15 (LOC106345748), transcript variant X1, mRNA homeobox-leucine zipper protein ATHB-15(LOC106345748) coding protein psRNATarget
© 2017 OPP-ncRBASE. All rights reserved.