ncRNA ID | novel_bna_miR130 |
Species | Brassica napus |
Class | miRNA |
Genome position | ChrA9:24539979-24540058 [+] |
Reference genome | Brassica_napus_assembly_v1.0 |
Source | SRR527231;SRR527232;SRR527233;SRR527234 |
Length | 21 |
Mature sequence(if miRNA) | 60 - AUACUCUAUAUUUUACUCUAU - 80 |
Stem-loop(if miRNA) |
--            U     A    A           CAA   AGAGUGAAAUAU GAGUA UCUU UUUUUUUACUC   A   |||||||||||| ||||| |||| |||||||||||   UCUCAUUUUAUA CUCAU AGAA AAAAAAGUGAG   U UA            U     A    C           AUA |
Stem-loop sequence | AGAGUGAAAUAUUGAGUAAUCUUAUUUUUUUACUCCAAAUAUAGAGUGAAAAAACAAGAAUACUCUAUAUUUUACUCUAU |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_013890437.1 |
|
2.5 | PREDICTED: Brassica napus putative F-box protein At1g47790 (LOC106448571), mRNA | putative F-box protein At1g47790(LOC106448571) | coding protein | psRNATarget |