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BaseInfo

ncRNA ID	novel_bna_miR129
Species	Brassica napus
Class	miRNA
Genome position	ChrA6:5293950-5294174 [-]
Reference genome	Brassica_napus_assembly_v1.0
Source	SRR1363495
Length	24
Mature sequence(if miRNA)	1 - AUCGCUCUGAUACCAUGUUAGAUU - 24
Stem-loop(if miRNA)	--                                 -UA   UAGUA     AUU  UA    U       -----------G       --      CAAUACCCUCCC       -     AU   UCUAACAUGGUAUCAGAGCGAUAAGAUCCUUUG   UAG     GAUUA   CU  UAUA CCGAUGU            GGAUGUU  UCUCAU            UCACGCU CAGAC  C   |||||||||||||||||||||||||||||||||   |||     |||||   ||  |||| |||||||            |||||||  ||||||            ||||||| |||||   AGAUUGUACCAUAGUCUCGCUAUUCUAGGAAAC   AUU     UUGAU   GA  AUAU GGCUACA            CCUACAA  AGAGUG            GGUGCGA GUCUG  U UU                                 UGG   UGAUG     GAU  UG    -       ACCCGGAAGACA       UA      -------UAACA       A     GA
Stem-loop sequence	UCUAACAUGGUAUCAGAGCGAUAAGAUCCUUUGUAUAGUAGUAGAUUAAUUCUUAUAUAUCCGAUGUGGGAUGUUUCUCAUCAAUACCCUCCCUCACGCUCAGACAUCUAGGUCUGAAGCGUGGACAAUGUGAGAAUAACAUCCACAGAAGGCCCAACAUCGGUAUAGUAGUAGUAGUUGUAGUUUAGGUCAAAGGAUCUUAUCGCUCUGAUACCAUGUUAGAUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_013839396.1	ncRNA:24   UUAGAUUGUACCAUAGUCUCGCUA   1   *||=*||||||||||||||||*|| targets:199   UAUUCAACAUGGUAUCAGAGCAAU   222 Target Full Sequence	1.5	PREDICTED: Brassica napus uncharacterized LOC106398895 (LOC106398895), mRNA	uncharacterized LOC106398895(LOC106398895)	coding protein	psRNATarget
XM_013784466.1	ncRNA:24   UUAGAUUGUACCAUAGUCUCGCUA   1   *||=*||||||||||||||||*|| targets:283   UAUUCAACAUGGUAUCAGAGCAAU   306 Target Full Sequence	1.5	PREDICTED: Brassica napus uncharacterized LOC106345239 (LOC106345239), mRNA	uncharacterized LOC106345239(LOC106345239)	coding protein	psRNATarget
XM_013823247.1	ncRNA:24   UUAGAUUGUACCAUAGUCUCGCUA   1   |**||||=||||||||||||||*| targets:80   ACACUAAUAUGGUAUCAGAGCGUU   103 Target Full Sequence	2.5	PREDICTED: Brassica napus uncharacterized LOC106383121 (LOC106383121), mRNA	uncharacterized LOC106383121(LOC106383121)	coding protein	psRNATarget
XM_013823251.1	ncRNA:24   UUAGAUUGUACCAUAGUCUCGCUA   1   |**||||=||||||||||||||*| targets:80   ACACUAAUAUGGUAUCAGAGCGUU   103 Target Full Sequence	2.5	PREDICTED: Brassica napus uncharacterized LOC106383124 (LOC106383124), mRNA	uncharacterized LOC106383124(LOC106383124)	coding protein	psRNATarget