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BaseInfo

ncRNA ID novel_bna_miR128
Species Brassica napus
Class miRNA
Genome position ChrA8:8089309-8089403 [-]
Reference genome Brassica_napus_assembly_v1.0
Source SRR527231;SRR527232;SRR527236;SRR521271
Length 20
Mature sequence(if miRNA) 76 - UUGGCAUUCUGUCCACCUCC - 95
Stem-loop(if miRNA) --      U C             U --U       -----U        A
  UUGGCA U UGUCCACCUCCUU C   GAAUAUA      UUGUGUAU A
  |||||| | ||||||||||||| |   |||||||      ||||||||
  AACCGU A ACGGGUGGAGGAG G   UUUGUGU      AACGCAUG G
AU      C U             U UGU       UGCAUC        U
Stem-loop sequence UUGGCAUUCUGUCCACCUCCUUUCUGAAUAUAUUUGUGUAUAAGUGUACGCAACUACGUUGUGUUUUGUGUGAGGAGGUGGGCAUACUGCCAAUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_013797750.1
ncRNA:20   CCUCCACCUGUCUUACGGUU   1
  ||||||*|||||||||||||
targets:1012   GGAGGUUGACAGAAUGCCAA   1031

1.0 PREDICTED: Brassica napus F-box only protein 6-like (LOC106358015), mRNA F-box only protein 6-like(LOC106358015) coding protein psRNATarget
XM_013866187.1
ncRNA:20   CCUCCACCUGUCUUACGGUU   1
  ||||||*|||||||||||||
targets:1246   GGAGGUUGACAGAAUGCCAA   1265

1.0 PREDICTED: Brassica napus F-box only protein 6-like (LOC106425452), mRNA F-box only protein 6-like(LOC106425452) coding protein psRNATarget
XM_013842388.1
ncRNA:20   CCUCCACCUGUCUUACGGUU   1
  ||||||*|||||||||||||
targets:1321   GGAGGUUGACAGAAUGCCAA   1340

1.0 PREDICTED: Brassica napus F-box only protein 6 (LOC106401800), mRNA F-box only protein 6(LOC106401800) coding protein psRNATarget
XM_013807079.1
ncRNA:20   CCUCCACCUGUCUUACGGUU   1
  ||||||*|||||||||||||
targets:1350   GGAGGUUGACAGAAUGCCAA   1369

1.0 PREDICTED: Brassica napus F-box only protein 6-like (LOC106367329), mRNA F-box only protein 6-like(LOC106367329) coding protein psRNATarget
XM_013844249.1
ncRNA:20   CCUCCACCUGUCUUACGGUU   1
  *|||**||||||||||||||
targets:975   UGAGAAGGACAGAAUGCCAA   994

2.0 PREDICTED: Brassica napus putative two-component response regulator-like APRR6 (LOC106403423), mRNA putative two-component response regulator-like APRR6(LOC106403423) coding protein psRNATarget