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BaseInfo

ncRNA ID	novel_bna_miR123
Species	Brassica napus
Class	miRNA
Genome position	ChrA6:5919298-5919480 [-]
Reference genome	Brassica_napus_assembly_v1.0
Source	SRR1363495
Length	23
Mature sequence(if miRNA)	1 - UAAAAGUUAAGAGACGGUUUCUA - 23
Stem-loop(if miRNA)	--     UA            --------       --AAA                                     GGAA  U  GAAACUAUCUU   GAAAC  UCUUUUAACUUU        AAAAUAA     GGCUUUUAGAUAAGAUGUUUAAGAGUCGGUUCUUAAC    UA AA           U   |||||  ||||||||||||        |||||||     |||||||||||||||||||||||||||||||||||||    || ||   CUUUG  AGAGAAUUGAAA        UUUUAUU     CCGAAAAUCUAUUCUACAAAUUCUCAGCCAAGAAUUG    AA AA           U AU     GC            AUUGAUUU       CUUGG                                     --AA  -  UAAAUUUUCAA
Stem-loop sequence	GAAACUAUCUUUUAACUUUAAAAUAAAAAGGCUUUUAGAUAAGAUGUUUAAGAGUCGGUUCUUAACGGAAUAUAAGAAACUAUCUUUUAACUUUUAAAUAAAAAAGUUAAGAACCGACUCUUAAACAUCUUAUCUAAAAGCCGGUUCUUAUUUUUUUAGUUAAAAGUUAAGAGACGGUUUCUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_013866316.1	ncRNA:23   AUCUUUGGCAGAGAAUUGAAAAU   1   *||||||*||=|||||||||||| targets:435   AAGAAACAGUUUCUUAACUUUUA   457 Target Full Sequence	2.5	PREDICTED: Brassica napus uncharacterized LOC106425589 (LOC106425589), mRNA	uncharacterized LOC106425589(LOC106425589)	coding protein	psRNATarget
XM_013865398.1	ncRNA:23   AUC---UUUGGCAGAGAAUUGAAAAU   1   *||---||||=*|||||||||||||* targets:1567   AAGUCAAAACUUUCUCUUAACUUUUU   1592 Target Full Sequence	3.0	PREDICTED: Brassica napus clathrin interactor EPSIN 1-like (LOC106424634), transcript variant X1, mRNA	clathrin interactor EPSIN 1-like(LOC106424634)	coding protein	psRNATarget
XM_013865399.1	ncRNA:23   AUC---UUUGGCAGAGAAUUGAAAAU   1   *||---||||=*|||||||||||||* targets:1557   AAGUCAAAACUUUCUCUUAACUUUUU   1582 Target Full Sequence	3.0	PREDICTED: Brassica napus clathrin interactor EPSIN 1-like (LOC106424634), transcript variant X2, mRNA	clathrin interactor EPSIN 1-like(LOC106424634)	coding protein	psRNATarget