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BaseInfo

ncRNA ID novel_bna_miR115
Species Brassica napus
Class miRNA
Genome position ChrA1:15442546-15442711 [-]
Reference genome Brassica_napus_assembly_v1.0
Source SRR527230;SRR527234;SRR527236;SRR521271;SRR527229
Length 20
Mature sequence(if miRNA) 1 - UUGGACUGAAGGGAACUCCC - 20
Stem-loop(if miRNA) --          A      U  A  UGU  U     --        U  -    A AC     C     CU  C     ---CA   
  GAGUUUCCUU AGUCCA UC CA   UG GAUUU  GAUCCAAU AG CUCC G  UCAUU ACUCA  UA CGAGU     CUAA
  |||||||||| |||||| || ||   || |||||  |||||||| || |||| |  ||||| |||||  || |||||     |||A
  CUCAAGGGAA UCAGGU AG GU   AC UUAGA  CUAGGUUA UC GAGG C  AGUAA UGAGU  AU GCUCA     GAUA
CC          G      U  C  --U  -     UU        U  A    G GU     A     AC  U     AUAAG   
Stem-loop sequence GAGUUUCCUUAAGUCCAUUCACAUGUUGUGAUUUGAUCCAAUUAGCUCCAGACUCAUUCACUCACUUACCGAGUCACUAAAAUAGGAAUAACUCGUUACAUGAGUAAAUGAUGCGGGAGACUUAUUGGAUCUUAGAUUCAUUGCGAUUGGACUGAAGGGAACUCCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
KR076552.1
ncRNA:20   CCCUCAAGGGAAGUCAGGUU   1
  *||||*||||||||*|||||
targets:875   UGGAGCUCCCUUCAUUCCAA   894

2.5 Brassica napus MYB transcription factor 81-2 (MYB81-2.1) mRNA, complete cds NA coding protein psRNATarget
XM_013876648.1
ncRNA:20   CCCUCAAGGGAAGUCAGGUU   1
  *||||*||||||||*|||||
targets:977   UGGAGCUCCCUUCAUUCCAA   996

2.5 PREDICTED: Brassica napus transcription factor GAMYB-like (LOC106435733), transcript variant X3, mRNA transcription factor GAMYB-like(LOC106435733) coding protein psRNATarget
XM_013876646.1
ncRNA:20   CCCUCAAGGGAAGUCAGGUU   1
  *||||*||||||||*|||||
targets:1093   UGGAGCUCCCUUCAUUCCAA   1112

2.5 PREDICTED: Brassica napus transcription factor GAMYB-like (LOC106435733), transcript variant X2, mRNA transcription factor GAMYB-like(LOC106435733) coding protein psRNATarget
XM_013879558.1
ncRNA:20   CCCUCAAGGGAAGUCAGGUU   1
  *||||*||||||||*|||||
targets:1023   UGGAGCUCCCUUCAUUCCAA   1042

2.5 PREDICTED: Brassica napus transcription factor MYB104-like (LOC106438414), transcript variant X3, mRNA transcription factor MYB104-like(LOC106438414) coding protein psRNATarget
XM_013863608.1
ncRNA:20   CCCUCAAGGGAAGUCAGGUU   1
  *||||*||||||||*|||||
targets:1053   UGGAGCUCCCUUCAUUCCAA   1072

2.5 PREDICTED: Brassica napus transcription factor GAMYB-like (LOC106422808), transcript variant X4, mRNA transcription factor GAMYB-like(LOC106422808) coding protein psRNATarget
XM_013876651.1
ncRNA:20   CCCUCAAGGGAAGUCAGGUU   1
  *||||*||||||||*|||||
targets:1101   UGGAGCUCCCUUCAUUCCAA   1120

2.5 PREDICTED: Brassica napus transcription factor GAMYB-like (LOC106435733), transcript variant X6, mRNA transcription factor GAMYB-like(LOC106435733) coding protein psRNATarget
XM_013863607.1
ncRNA:20   CCCUCAAGGGAAGUCAGGUU   1
  *||||*||||||||*|||||
targets:1073   UGGAGCUCCCUUCAUUCCAA   1092

2.5 PREDICTED: Brassica napus transcription factor GAMYB-like (LOC106422808), transcript variant X3, mRNA transcription factor GAMYB-like(LOC106422808) coding protein psRNATarget
XM_013876650.1
ncRNA:20   CCCUCAAGGGAAGUCAGGUU   1
  *||||*||||||||*|||||
targets:1101   UGGAGCUCCCUUCAUUCCAA   1120

2.5 PREDICTED: Brassica napus transcription factor GAMYB-like (LOC106435733), transcript variant X5, mRNA transcription factor GAMYB-like(LOC106435733) coding protein psRNATarget
XM_013876649.1
ncRNA:20   CCCUCAAGGGAAGUCAGGUU   1
  *||||*||||||||*|||||
targets:1101   UGGAGCUCCCUUCAUUCCAA   1120

2.5 PREDICTED: Brassica napus transcription factor GAMYB-like (LOC106435733), transcript variant X4, mRNA transcription factor GAMYB-like(LOC106435733) coding protein psRNATarget
XM_013876645.1
ncRNA:20   CCCUCAAGGGAAGUCAGGUU   1
  *||||*||||||||*|||||
targets:1101   UGGAGCUCCCUUCAUUCCAA   1120

2.5 PREDICTED: Brassica napus transcription factor GAMYB-like (LOC106435733), transcript variant X1, mRNA transcription factor GAMYB-like(LOC106435733) coding protein psRNATarget
XM_013894677.1
ncRNA:20   CCCUCAAGGGAAGUCAGGUU   1
  *||||*||||||||*|||||
targets:1115   UGGAGCUCCCUUCAUUCCAA   1134

2.5 PREDICTED: Brassica napus transcription factor GAMYB (LOC106452529), transcript variant X2, mRNA transcription factor GAMYB(LOC106452529) coding protein psRNATarget
XM_013879555.1
ncRNA:20   CCCUCAAGGGAAGUCAGGUU   1
  *||||*||||||||*|||||
targets:1266   UGGAGCUCCCUUCAUUCCAA   1285

2.5 PREDICTED: Brassica napus transcription factor MYB104-like (LOC106438414), transcript variant X1, mRNA transcription factor MYB104-like(LOC106438414) coding protein psRNATarget
XM_013828453.1
ncRNA:20   CCCUCAAGGGAAGUCAGGUU   1
  *||||*||||||||*|||||
targets:1344   UGGAGCUCCCUUCAUUCCAA   1363

2.5 PREDICTED: Brassica napus transcription factor MYB104-like (LOC106388396), mRNA transcription factor MYB104-like(LOC106388396) coding protein psRNATarget
XM_013879650.1
ncRNA:20   CCCUCAAGGGAAGUCAGGUU   1
  *||||*||||||||*|||||
targets:1344   UGGAGCUCCCUUCAUUCCAA   1363

2.5 PREDICTED: Brassica napus transcription factor MYB104-like (LOC106438484), mRNA transcription factor MYB104-like(LOC106438484) coding protein psRNATarget
XM_013828451.1
ncRNA:20   CCCUCAAGGGAAGUCAGGUU   1
  *||||*||||||||*|||||
targets:1344   UGGAGCUCCCUUCAUUCCAA   1363

2.5 PREDICTED: Brassica napus transcription factor MYB104-like (LOC106388394), mRNA transcription factor MYB104-like(LOC106388394) coding protein psRNATarget
XM_013879557.1
ncRNA:20   CCCUCAAGGGAAGUCAGGUU   1
  *||||*||||||||*|||||
targets:1478   UGGAGCUCCCUUCAUUCCAA   1497

2.5 PREDICTED: Brassica napus transcription factor MYB104-like (LOC106438414), transcript variant X2, mRNA transcription factor MYB104-like(LOC106438414) coding protein psRNATarget
XM_013894678.1
ncRNA:20   CCCUCAAGGGAAGUCAGGUU   1
  *||||*||||||||*|||||
targets:1568   UGGAGCUCCCUUCAUUCCAA   1587

2.5 PREDICTED: Brassica napus transcription factor GAMYB (LOC106452529), transcript variant X3, mRNA transcription factor GAMYB(LOC106452529) coding protein psRNATarget
XM_013894676.1
ncRNA:20   CCCUCAAGGGAAGUCAGGUU   1
  *||||*||||||||*|||||
targets:1568   UGGAGCUCCCUUCAUUCCAA   1587

2.5 PREDICTED: Brassica napus transcription factor GAMYB (LOC106452529), transcript variant X1, mRNA transcription factor GAMYB(LOC106452529) coding protein psRNATarget
XM_013863606.1
ncRNA:20   CCCUCAAGGGAAGUCAGGUU   1
  *||||*||||||||*|||||
targets:1645   UGGAGCUCCCUUCAUUCCAA   1664

2.5 PREDICTED: Brassica napus transcription factor GAMYB-like (LOC106422808), transcript variant X2, mRNA transcription factor GAMYB-like(LOC106422808) coding protein psRNATarget
XM_013863605.1
ncRNA:20   CCCUCAAGGGAAGUCAGGUU   1
  *||||*||||||||*|||||
targets:1645   UGGAGCUCCCUUCAUUCCAA   1664

2.5 PREDICTED: Brassica napus transcription factor GAMYB-like (LOC106422808), transcript variant X1, mRNA transcription factor GAMYB-like(LOC106422808) coding protein psRNATarget
XM_013863609.1
ncRNA:20   CCCUCAAGGGAAGUCAGGUU   1
  *||||*||||||||*|||||
targets:1645   UGGAGCUCCCUUCAUUCCAA   1664

2.5 PREDICTED: Brassica napus transcription factor GAMYB-like (LOC106422808), transcript variant X5, mRNA transcription factor GAMYB-like(LOC106422808) coding protein psRNATarget
XM_013819349.1
ncRNA:20   CCCUCAAGGGAAGUCAGGUU   1
  *||=||*||||||||||||=
targets:805   AGGGGUCCCCUUCAGUCCAG   824

3.0 PREDICTED: Brassica napus transcription factor TCP4-like (LOC106379046), mRNA transcription factor TCP4-like(LOC106379046) coding protein psRNATarget
XM_013789288.1
ncRNA:20   CCCUCAAGGGAAGUCAGGUU   1
  *||=||*||||||||||||=
targets:1222   AGGGGUCCCCUUCAGUCCAG   1241

3.0 PREDICTED: Brassica napus transcription factor TCP4-like (LOC106349336), mRNA transcription factor TCP4-like(LOC106349336) coding protein psRNATarget
XM_013876776.1
ncRNA:20   CCCUCAAGGGAAGUCAGGUU   1
  *||=||*||||||||||||=
targets:1335   CGGGGUACCCUUCAGUCCAG   1354

3.0 PREDICTED: Brassica napus transcription factor TCP10-like (LOC106435851), transcript variant X1, mRNA transcription factor TCP10-like(LOC106435851) coding protein psRNATarget
XM_013876777.1
ncRNA:20   CCCUCAAGGGAAGUCAGGUU   1
  *||=||*||||||||||||=
targets:1336   CGGGGUACCCUUCAGUCCAG   1355

3.0 PREDICTED: Brassica napus transcription factor TCP10-like (LOC106435851), transcript variant X2, mRNA transcription factor TCP10-like(LOC106435851) coding protein psRNATarget
XM_013880834.1
ncRNA:20   CCCUCAAGGGAAGUCAGGUU   1
  *||=||*||||||||||||=
targets:1254   AGGGGUCCCCUUCAGUCCAG   1273

3.0 PREDICTED: Brassica napus transcription factor TCP4-like (LOC106439393), transcript variant X2, mRNA transcription factor TCP4-like(LOC106439393) coding protein psRNATarget
XM_013893295.1
ncRNA:20   CCCUCAAGGGAAGUCAGGUU   1
  *||=||*||||||||||||=
targets:1340   CGGGGUACCCUUCAGUCCAG   1359

3.0 PREDICTED: Brassica napus transcription factor TCP10-like (LOC106451371), transcript variant X2, mRNA transcription factor TCP10-like(LOC106451371) coding protein psRNATarget
XM_013893294.1
ncRNA:20   CCCUCAAGGGAAGUCAGGUU   1
  *||=||*||||||||||||=
targets:1340   CGGGGUACCCUUCAGUCCAG   1359

3.0 PREDICTED: Brassica napus transcription factor TCP10-like (LOC106451371), transcript variant X1, mRNA transcription factor TCP10-like(LOC106451371) coding protein psRNATarget
XM_013829397.1
ncRNA:20   CCCUCAAGGGAAGUCAGGUU   1
  *||=||*||||||||||||=
targets:1280   AGGGGUCCCCUUCAGUCCAG   1299

3.0 PREDICTED: Brassica napus transcription factor TCP4-like (LOC106389193), transcript variant X2, mRNA transcription factor TCP4-like(LOC106389193) coding protein psRNATarget
XM_013880833.1
ncRNA:20   CCCUCAAGGGAAGUCAGGUU   1
  *||=||*||||||||||||=
targets:1288   AGGGGUCCCCUUCAGUCCAG   1307

3.0 PREDICTED: Brassica napus transcription factor TCP4-like (LOC106439393), transcript variant X1, mRNA transcription factor TCP4-like(LOC106439393) coding protein psRNATarget
XM_013829396.1
ncRNA:20   CCCUCAAGGGAAGUCAGGUU   1
  *||=||*||||||||||||=
targets:1298   AGGGGUCCCCUUCAGUCCAG   1317

3.0 PREDICTED: Brassica napus transcription factor TCP4-like (LOC106389193), transcript variant X1, mRNA transcription factor TCP4-like(LOC106389193) coding protein psRNATarget
XM_013841391.1
ncRNA:20   CCCUCAAGGGAAGUCAGGUU   1
  *||=||*||||||||||||=
targets:1422   AGGGGUCCCCUUCAGUCCAG   1441

3.0 PREDICTED: Brassica napus transcription factor TCP4-like (LOC106400977), mRNA transcription factor TCP4-like(LOC106400977) coding protein psRNATarget
XM_013799159.1
ncRNA:20   CCCUCAAGGGAAGUCAGGUU   1
  *||=||*||||||||||||*
targets:905   AGGGGUCCCCUUCAGUCCAU   924

3.0 PREDICTED: Brassica napus transcription factor TCP3-like (LOC106359455), mRNA transcription factor TCP3-like(LOC106359455) coding protein psRNATarget
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