Search result

BaseInfo

ncRNA ID	novel_bna_miR104
Species	Brassica napus
Class	miRNA
Genome position	ChrC5:4692830-4692944 [+]
Reference genome	Brassica_napus_assembly_v1.0
Source	SRR527230
Length	22
Mature sequence(if miRNA)	1 - GGGCAAAUACUCCAUUGGCAGA - 22
Stem-loop(if miRNA)	--        A    A       A   ----    -CG -            --U  U       GGGCAAAU CUCC UUGGCAG UAA    UUUC   C UACAUAUAUAUA   CA UUGAA   |||||||| |||| ||||||| |||    ||||   | ||||||||||||   || ||||U   CCCGUUUA GAGG AACCGUC AUU    AAAG   G AUGUAUAUAUAU   GU GAUUA GC        -    A       -   UCAC    AAA U            UCC  U
Stem-loop sequence	GGGCAAAUACUCCAUUGGCAGAUAAUUUCCGCUACAUAUAUAUAUCAUUUGAAUAUUAGUUGCCUUAUAUAUAUGUAUGAAAGAAACACUUUACUGCCAAAGGAGAUUUGCCCCG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_013838522.1	ncRNA:22   AGACGGUUACCUCAUAAACGGG   1   ||||*=|||||||||||||||| targets:739   UCUGAUAAUGGAGUAUUUGCCC   760 Target Full Sequence	2.0	PREDICTED: Brassica napus serine/threonine-protein kinase tricorner-like (LOC106397894), transcript variant X3, mRNA	serine/threonine-protein kinase tricorner-like(LOC106397894)	coding protein	psRNATarget
XM_013838521.1	ncRNA:22   AGACGGUUACCUCAUAAACGGG   1   ||||*=|||||||||||||||| targets:833   UCUGAUAAUGGAGUAUUUGCCC   854 Target Full Sequence	2.0	PREDICTED: Brassica napus serine/threonine-protein kinase tricorner-like (LOC106397894), transcript variant X2, mRNA	serine/threonine-protein kinase tricorner-like(LOC106397894)	coding protein	psRNATarget
XM_013838520.1	ncRNA:22   AGACGGUUACCUCAUAAACGGG   1   ||||*=|||||||||||||||| targets:875   UCUGAUAAUGGAGUAUUUGCCC   896 Target Full Sequence	2.0	PREDICTED: Brassica napus serine/threonine-protein kinase tricorner-like (LOC106397894), transcript variant X1, mRNA	serine/threonine-protein kinase tricorner-like(LOC106397894)	coding protein	psRNATarget