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BaseInfo

ncRNA ID novel_bna_miR97
Species Brassica napus
Class miRNA
Genome position ChrC4:60029570-60029702 [-]
Reference genome Brassica_napus_assembly_v1.0
Source SRR527230;SRR527236;SRR2015555;SRR524726;SRR527229
Length 21
Mature sequence(if miRNA) 113 - UUCCACAGCUUUCUUGAACUG - 133
Stem-loop(if miRNA) --            C           --CCU  -UU     -      CUAUUCUCACAUAUAU    C      
  UUCCACAGCUUU UUGAACUGCAA     UC   CAGAU UAGUUU                AUUA CAUAGCA
  |||||||||||| |||||||||||     ||   ||||| ||||||                |||| ||||||U
  AGGGUGUCGAAA AACUUGGCGUU     AG   GUCUA GUUAAA                UAAU GUAUUGA
GA            U           UAGUC  CUU     C      --------------UU    U      
Stem-loop sequence UUCCACAGCUUUCUUGAACUGCAACCUUCUUCAGAUUAGUUUCUAUUCUCACAUAUAUAUUACCAUAGCAUAGUUAUGUUAAUUUAAAUUGCAUCUGUUCGACUGAUUUGCGGUUCAAUAAAGCUGUGGGAAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_013859507.1
ncRNA:21   GUCAAGUUCUUUCGACACCUU   1
  *||*|||||||||||||||=|
targets:40   AAGCUCAAGAAAGCUGUGGGA   60

2.5 PREDICTED: Brassica napus uncharacterized LOC106418749 (LOC106418749), transcript variant X1, mRNA uncharacterized LOC106418749(LOC106418749) coding protein psRNATarget
XM_013859508.1
ncRNA:21   GUCAAGUUCUUUCGACACCUU   1
  *||*|||||||||||||||=|
targets:40   AAGCUCAAGAAAGCUGUGGGA   60

2.5 PREDICTED: Brassica napus uncharacterized LOC106418749 (LOC106418749), transcript variant X2, mRNA uncharacterized LOC106418749(LOC106418749) coding protein psRNATarget
XM_013874623.1
ncRNA:21   GUCAAGUUCUUUCGACACCUU   1
  *=|||||*|||||=|||||||
targets:362   GGGUUCAUGAAAGUUGUGGAA   382

2.5 PREDICTED: Brassica napus uncharacterized LOC106433793 (LOC106433793), mRNA uncharacterized LOC106433793(LOC106433793) coding protein psRNATarget
XM_013866614.1
ncRNA:21   GUCAAGUUCUUUCGACACCUU   1
  *=|||||*|||||=|||||||
targets:364   GGGUUCAUGAAAGUUGUGGAA   384

2.5 PREDICTED: Brassica napus uncharacterized LOC106425891 (LOC106425891), mRNA uncharacterized LOC106425891(LOC106425891) coding protein psRNATarget
XM_013817334.1
ncRNA:21   GUCAAGUUCUUUCGACACCUU   1
  *=|||||*|||||=|||||||
targets:511   GGGUUCAUGAAAGUUGUGGAA   531

2.5 PREDICTED: Brassica napus uncharacterized LOC106377156 (LOC106377156), mRNA uncharacterized LOC106377156(LOC106377156) coding protein psRNATarget
XM_013793302.1
ncRNA:21   GUCAAGUUCUUUCGACACCUU   1
  *|||*|||||||||||*||||
targets:881   GAGUACAAGAAAGCUGGGGAA   901

2.5 PREDICTED: Brassica napus general transcription factor IIF subunit 2-like (LOC106353538), mRNA general transcription factor IIF subunit 2-like(LOC106353538) coding protein psRNATarget
XM_013803223.1
ncRNA:21   GUCAAGUUCUUUCG-ACACCUU   1
  |*||||||||||||-|||||||
targets:663   CCGUUCAAGAAAGCCUGUGGAA   684

3.0 PREDICTED: Brassica napus growth-regulating factor 4-like (LOC106363494), mRNA growth-regulating factor 4-like(LOC106363494) coding protein psRNATarget
XM_013866257.1
ncRNA:21   GUCAAGUUCUUUCG-ACACCUU   1
  |*||||||||||||-|||||||
targets:537   CCGUUCAAGAAAGCCUGUGGAA   558

3.0 PREDICTED: Brassica napus growth-regulating factor 4-like (LOC106425533), mRNA growth-regulating factor 4-like(LOC106425533) coding protein psRNATarget
XM_013826141.1
ncRNA:21   GUCAAGUUCUUUCG-ACACCUU   1
  |*||||||||||||-|||||||
targets:601   CCGUUCAAGAAAGCCUGUGGAA   622

3.0 PREDICTED: Brassica napus growth-regulating factor 4-like (LOC106386272), mRNA growth-regulating factor 4-like(LOC106386272) coding protein psRNATarget
XM_013878912.1
ncRNA:21   GUCAAGUUCUUUCG-ACACCUU   1
  |*||||||||||||-|||||||
targets:601   CCGUUCAAGAAAGCCUGUGGAA   622

3.0 PREDICTED: Brassica napus growth-regulating factor 3-like (LOC106437900), mRNA growth-regulating factor 3-like(LOC106437900) coding protein psRNATarget
XM_013784657.1
ncRNA:21   GUCAAGUUCUUUCG-ACACCUU   1
  |*||||||||||||-|||||||
targets:642   CCGUUCAAGAAAGCCUGUGGAA   663

3.0 PREDICTED: Brassica napus growth-regulating factor 4-like (LOC106345451), mRNA growth-regulating factor 4-like(LOC106345451) coding protein psRNATarget
XM_013828114.1
ncRNA:21   GUCAAGUUCUUUCG-ACACCUU   1
  |*||||||||||||-|||||||
targets:788   CCGUUCAAGAAAGCCUGUGGAA   809

3.0 PREDICTED: Brassica napus growth-regulating factor 3-like (LOC106388118), mRNA growth-regulating factor 3-like(LOC106388118) coding protein psRNATarget
XM_013828119.1
ncRNA:21   GUCAAGUUCUUUCG-ACACCUU   1
  |*||||||||||||-|||||||
targets:788   CCGUUCAAGAAAGCCUGUGGAA   809

3.0 PREDICTED: Brassica napus growth-regulating factor 3-like (LOC106388121), transcript variant X2, mRNA growth-regulating factor 3-like(LOC106388121) coding protein psRNATarget
XM_013836607.1
ncRNA:21   GUCAAGUUCUUUCG-ACACCUU   1
  |*||||||||||||-|||||||
targets:758   CCGUUCAAGAAAGCCUGUGGAA   779

3.0 PREDICTED: Brassica napus growth-regulating factor 3-like (LOC106396265), mRNA growth-regulating factor 3-like(LOC106396265) coding protein psRNATarget
XM_013828118.1
ncRNA:21   GUCAAGUUCUUUCG-ACACCUU   1
  |*||||||||||||-|||||||
targets:788   CCGUUCAAGAAAGCCUGUGGAA   809

3.0 PREDICTED: Brassica napus growth-regulating factor 3-like (LOC106388121), transcript variant X1, mRNA growth-regulating factor 3-like(LOC106388121) coding protein psRNATarget
XM_013828115.1
ncRNA:21   GUCAAGUUCUUUCG-ACACCUU   1
  |*||||||||||||-|||||||
targets:788   CCGUUCAAGAAAGCCUGUGGAA   809

3.0 PREDICTED: Brassica napus growth-regulating factor 3-like (LOC106388119), mRNA growth-regulating factor 3-like(LOC106388119) coding protein psRNATarget
XM_013889226.1
ncRNA:21   GUCAAGUUCUUUCG-ACACCUU   1
  |*||||||||||||-|||||||
targets:779   CCGUUCAAGAAAGCCUGUGGAA   800

3.0 PREDICTED: Brassica napus growth-regulating factor 3-like (LOC106447330), mRNA growth-regulating factor 3-like(LOC106447330) coding protein psRNATarget
XM_013832135.1
ncRNA:21   GUCAAGUUCUUUCG-ACACCUU   1
  |*||||||||||||-|||||||
targets:790   CCGUUCAAGAAAGCCUGUGGAA   811

3.0 PREDICTED: Brassica napus growth-regulating factor 3-like (LOC106391473), mRNA growth-regulating factor 3-like(LOC106391473) coding protein psRNATarget
XM_013807663.1
ncRNA:21   GUCAAGUUCUUUCG-ACACCUU   1
  |*||||||||||||-|||||||
targets:798   CCGUUCAAGAAAGCCUGUGGAA   819

3.0 PREDICTED: Brassica napus growth-regulating factor 4-like (LOC106367805), mRNA growth-regulating factor 4-like(LOC106367805) coding protein psRNATarget
XM_013892978.1
ncRNA:21   GUCAAGUUCUUUCG-ACACCUU   1
  |*||||||||||||-|||||||
targets:757   CCGUUCAAGAAAGCCUGUGGAA   778

3.0 PREDICTED: Brassica napus growth-regulating factor 3 (LOC106451116), mRNA growth-regulating factor 3(LOC106451116) coding protein psRNATarget
XM_013807795.1
ncRNA:21   GUCAAGUUCUUUCG-ACACCUU   1
  |*||||||||||||-|||||||
targets:765   CCGUUCAAGAAAGCCUGUGGAA   786

3.0 PREDICTED: Brassica napus growth-regulating factor 4-like (LOC106367927), mRNA growth-regulating factor 4-like(LOC106367927) coding protein psRNATarget
XM_013882574.1
ncRNA:21   GUCAAGUUCUUUCG-ACACCUU   1
  =*||||||||||||-|||||||
targets:627   UCGUUCAAGAAAGCAUGUGGAA   648

3.0 PREDICTED: Brassica napus growth-regulating factor 8-like (LOC106440817), transcript variant X1, mRNA growth-regulating factor 8-like(LOC106440817) coding protein psRNATarget
XM_013859616.1
ncRNA:21   GUCAAGUUCUUUCG-ACACCUU   1
  =*||||||||||||-|||||||
targets:634   UCGUUCAAGAAAGCAUGUGGAA   655

3.0 PREDICTED: Brassica napus growth-regulating factor 7 (LOC106418874), mRNA growth-regulating factor 7(LOC106418874) coding protein psRNATarget
XM_013819293.1
ncRNA:21   GUCAAGUUCUUUCG-ACACCUU   1
  =*||||||||||||-|||||||
targets:632   UCGUUCAAGAAAGCAUGUGGAA   653

3.0 PREDICTED: Brassica napus growth-regulating factor 7-like (LOC106379296), mRNA growth-regulating factor 7-like(LOC106379296) coding protein psRNATarget
XM_013816053.1
ncRNA:21   GUCAAGUUCUUUCG-ACACCUU   1
  =*||||||||||||-|||||||
targets:680   UCGUUCAAGAAAGCAUGUGGAA   701

3.0 PREDICTED: Brassica napus growth-regulating factor 8-like (LOC106376014), transcript variant X2, mRNA growth-regulating factor 8-like(LOC106376014) coding protein psRNATarget
XM_013832836.1
ncRNA:21   GUCAAGUUCUUUCGA-CACCUU   1
  **|||||||||||||-||||||
targets:637   ACGUUCAAGAAAGCUUGUGGAA   658

3.0 PREDICTED: Brassica napus growth-regulating factor 9-like (LOC106392058), transcript variant X2, mRNA growth-regulating factor 9-like(LOC106392058) coding protein psRNATarget
XM_013832835.1
ncRNA:21   GUCAAGUUCUUUCGA-CACCUU   1
  **|||||||||||||-||||||
targets:637   ACGUUCAAGAAAGCUUGUGGAA   658

3.0 PREDICTED: Brassica napus growth-regulating factor 9-like (LOC106392058), transcript variant X1, mRNA growth-regulating factor 9-like(LOC106392058) coding protein psRNATarget
XM_013816057.1
ncRNA:21   GUCAAGUUCUUUCG-ACACCUU   1
  =*||||||||||||-|||||||
targets:910   UCGUUCAAGAAAGCAUGUGGAA   931

3.0 PREDICTED: Brassica napus growth-regulating factor 8-like (LOC106376016), transcript variant X2, mRNA growth-regulating factor 8-like(LOC106376016) coding protein psRNATarget
XM_013816054.1
ncRNA:21   GUCAAGUUCUUUCG-ACACCUU   1
  =*||||||||||||-|||||||
targets:910   UCGUUCAAGAAAGCAUGUGGAA   931

3.0 PREDICTED: Brassica napus growth-regulating factor 8-like (LOC106376014), transcript variant X3, mRNA growth-regulating factor 8-like(LOC106376014) coding protein psRNATarget
XM_013816056.1
ncRNA:21   GUCAAGUUCUUUCG-ACACCUU   1
  =*||||||||||||-|||||||
targets:910   UCGUUCAAGAAAGCAUGUGGAA   931

3.0 PREDICTED: Brassica napus growth-regulating factor 8-like (LOC106376016), transcript variant X1, mRNA growth-regulating factor 8-like(LOC106376016) coding protein psRNATarget
XM_013816052.1
ncRNA:21   GUCAAGUUCUUUCG-ACACCUU   1
  =*||||||||||||-|||||||
targets:910   UCGUUCAAGAAAGCAUGUGGAA   931

3.0 PREDICTED: Brassica napus growth-regulating factor 8-like (LOC106376014), transcript variant X1, mRNA growth-regulating factor 8-like(LOC106376014) coding protein psRNATarget
XM_013882576.1
ncRNA:21   GUCAAGUUCUUUCG-ACACCUU   1
  =*||||||||||||-|||||||
targets:1084   UCGUUCAAGAAAGCAUGUGGAA   1105

3.0 PREDICTED: Brassica napus growth-regulating factor 8-like (LOC106440817), transcript variant X2, mRNA growth-regulating factor 8-like(LOC106440817) coding protein psRNATarget
XM_013894186.1
ncRNA:21   GUCAAGUUCUUUCGA-CACCUU   1
  **|||||||||||||-||||||
targets:1281   ACGUUCAAGAAAGCUUGUGGAA   1302

3.0 PREDICTED: Brassica napus growth-regulating factor 9-like (LOC106452158), mRNA growth-regulating factor 9-like(LOC106452158) coding protein psRNATarget
XM_013860666.1
ncRNA:21   GUCAAGUUCUUUCGACACCUU   1
  |=|**|||||||||||||||=
targets:731   CGGAACAAGAAAGCUGUGGAG   751

3.0 PREDICTED: Brassica napus transcription factor bHLH74 (LOC106419828), mRNA transcription factor bHLH74(LOC106419828) coding protein psRNATarget
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