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BaseInfo

ncRNA ID	ath-miRf10555-npr
Species	Arabidopsis thaliana
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	20
Mature sequence(if miRNA)	NA - GCGCUGACGUGGCUCUCGGA - NA
Stem-loop(if miRNA)	CU             UC     GAG   - AUGCCGA    -- A -  --- AUA  UACAGAGACGUCACGGAUAUUCGACAUGUCGAGGAUGAAAAAUGGUUUGUCGGAAA   CUCCGAGAGUCGC  CGGCG   AUC C       AUUC  G G GC   G   UC                                                        U   |||||||||||||  |||||   ||| |       ||||  | | ||   |   ||   GAGGCUCUCGGUG  GUCGC   GCG C       AGUG  C G GU   U   GG                                                        G GC             CA     --G   G -------    AA - A  UUU ---  GAUUUAAAGGAGGAGUUUUAGGCUUCGCCGCCGGUACUGAUGCUACCAGAGAGAAU
Stem-loop sequence	CUCUCCGAGAGUCGCUCCGGCGGAGAUCCAUGCCGAAUUCGAGGCGAUAUCUACAGAGACGUCACGGAUAUUCGACAUGUCGAGGAUGAAAAAUGGUUUGUCGGAAAUGUAAGAGAGACCAUCGUAGUCAUGGCCGCCGCUUCGGAUUUUGAGGAGGAAAUUUAGGGUUUUUGAGCAAGUGACGGCGGCGCUGACGUGGCUCUCGGAGCG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AF083756.1	ncRNA:20   AGGCUCUCGGUGCAGUCGCG   1   |||||||||||||||||||| targets:328   UCCGAGAGCCACGUCAGCGC   347 Target Full Sequence	0.0	Arabidopsis thaliana clone sps588 unknown mRNA	NA	coding protein	psRNATarget
AY133533.1	ncRNA:20   AGGCUCUCGGUGCAGUCGCG   1   |||||||||||||||||||| targets:283   UCCGAGAGCCACGUCAGCGC   302 Target Full Sequence	0.0	Arabidopsis thaliana At4g20830/F21C20_180 mRNA, complete cds	NA	coding protein	psRNATarget
BX827481.1	ncRNA:20   AGGCUCUCGGUGCAGUCGCG   1   |||||||||||||||||||| targets:298   UCCGAGAGCCACGUCAGCGC   317 Target Full Sequence	0.0	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS60ZB02 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
BX827154.1	ncRNA:20   AGGCUCUCGGUGCAGUCGCG   1   |||||||||||||||||||| targets:298   UCCGAGAGCCACGUCAGCGC   317 Target Full Sequence	0.0	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS17ZF05 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
NM_202851.1	ncRNA:20   AGGCUCUCGGUGCAGUCGCG   1   |||||||||||||||||||| targets:309   UCCGAGAGCCACGUCAGCGC   328 Target Full Sequence	0.0	Arabidopsis thaliana FAD-binding Berberine family protein mRNA	FAD-binding Berberine family protein(AT4G20830)	coding protein	psRNATarget
AF424621.1	ncRNA:20   AGGCUCUCGGUGCAGUCGCG   1   |||||||||||||||||||| targets:309   UCCGAGAGCCACGUCAGCGC   328 Target Full Sequence	0.0	Arabidopsis thaliana AT4g20830/F21C20_180 mRNA, complete cds	NA	coding protein	psRNATarget
AK316833.1	ncRNA:20   AGGCUCUCGGUGCAGUCGCG   1   |||||||||||||||||||| targets:313   UCCGAGAGCCACGUCAGCGC   332 Target Full Sequence	0.0	Arabidopsis thaliana AT4G20830 mRNA, complete cds, clone: RAFL07-44-C19	NA	coding protein	psRNATarget
NM_118201.3	ncRNA:20   AGGCUCUCGGUGCAGUCGCG   1   |||||||||||||||||||| targets:316   UCCGAGAGCCACGUCAGCGC   335 Target Full Sequence	0.0	Arabidopsis thaliana FAD-binding Berberine family protein mRNA	FAD-binding Berberine family protein(AT4G20830)	coding protein	psRNATarget
AY062595.1	ncRNA:20   AGGCUCUCGGUGCAGUCGCG   1   |||||||||||||||||||| targets:309   UCCGAGAGCCACGUCAGCGC   328 Target Full Sequence	0.0	Arabidopsis thaliana Unknown protein (F21C20.180:F21C20.190) mRNA, complete cds	NA	coding protein	psRNATarget
AY560890.1	ncRNA:20   AGGCUCUCGGUGCAGUCGCG   1   ||||||||||||||*||||| targets:209   UCCGAGAGCCACGUAAGCGC   228 Target Full Sequence	1.5	Arabidopsis thaliana putative AP2/EREBP transcription factor (At2g40220) mRNA, complete cds	NA	coding protein	psRNATarget
DQ446612.1	ncRNA:20   AGGCUCUCGGUGCAGUCGCG   1   ||||||||||||||*||||| targets:209   UCCGAGAGCCACGUAAGCGC   228 Target Full Sequence	1.5	Arabidopsis thaliana clone pENTR221-At2g40220 abscisic acid-insensitive 4 (At2g40220) mRNA, complete cds	NA	coding protein	psRNATarget
DQ653050.1	ncRNA:20   AGGCUCUCGGUGCAGUCGCG   1   ||||||||||||||*||||| targets:209   UCCGAGAGCCACGUAAGCGC   228 Target Full Sequence	1.5	Arabidopsis thaliana clone 0000012408_0000008954 unknown mRNA	NA	coding protein	psRNATarget
NM_129580.2	ncRNA:20   AGGCUCUCGGUGCAGUCGCG   1   ||||||||||||||*||||| targets:209   UCCGAGAGCCACGUAAGCGC   228 Target Full Sequence	1.5	Arabidopsis thaliana Integrase-type DNA-binding superfamily protein (ABI4), partial mRNA	Integrase-type DNA-binding superfamily protein(ABI4)	coding protein	psRNATarget
AY062595.1	ncRNA:20   AGGCUCUCGGUGCAGUCGCG   1   |||||*|*|||||||||||| targets:2736   UCCGAUAUCCACGUCAGCGC   2755 Target Full Sequence	2.5	Arabidopsis thaliana Unknown protein (F21C20.180:F21C20.190) mRNA, complete cds	NA	coding protein	psRNATarget
AK317639.1	ncRNA:20   AGGCUCUCGGUGCAGUCGCG   1   |||||*|*|||||||||||| targets:295   UCCGAUAUCCACGUCAGCGC   314 Target Full Sequence	2.5	Arabidopsis thaliana AT4G20840 mRNA, complete cds, clone: RAFL23-08-C23	NA	coding protein	psRNATarget
NM_118202.2	ncRNA:20   AGGCUCUCGGUGCAGUCGCG   1   |||||*|*|||||||||||| targets:280   UCCGAUAUCCACGUCAGCGC   299 Target Full Sequence	2.5	Arabidopsis thaliana FAD-binding Berberine family protein partial mRNA	FAD-binding Berberine family protein(AT4G20840)	coding protein	psRNATarget