ncRNA ID | ath-miRf10554-npr |
Species | Arabidopsis thaliana |
Class | miRNA |
Genome position | NA |
Reference genome | NA |
Source | PNRD |
Length | 20 |
Mature sequence(if miRNA) | NA - GGUCUAAGUGUACGAAUCAA - NA |
Stem-loop(if miRNA) |
     A      U                         CAU           ------CAG            G CUUUU ACUGUU GAUUCGUACACUUAGAUCUGUACAA   UUUUUAGUGUA         AUGUAAGUGUAC U ||||| |||||| |||||||||||||||||||||||||   |||||||||||         |||||||||||| U GAAAA UGACAA CUAAGCAUGUGAAUCUGGACAUGUU   AAAAAUCACAU         UAUAUUUAUAUG G      G      -                         -AU           AUAUAUAUA            U |
Stem-loop sequence | CUUUUAACUGUUUGAUUCGUACACUUAGAUCUGUACAACAUUUUUUAGUGUACAGAUGUAAGUGUACGUUGUGUAUAUUUAUAUAUAUAUAUAUACACUAAAAAUAUUGUACAGGUCUAAGUGUACGAAUCAACAGUGAAAAG |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
NM_179830.1 |
|
2.5 | Arabidopsis thaliana basic helix-loop-helix (bHLH) DNA-binding superfamily protein partial mRNA | basic helix-loop-helix (bHLH) DNA-binding superfamily protein(AT2G31215) | coding protein | psRNATarget |