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BaseInfo

ncRNA ID ath-miRf10554-npr
Species Arabidopsis thaliana
Class miRNA
Genome position NA
Reference genome NA
Source PNRD
Length 20
Mature sequence(if miRNA) NA - GGUCUAAGUGUACGAAUCAA - NA
Stem-loop(if miRNA)      A      U                         CAU           ------CAG            G
CUUUU ACUGUU GAUUCGUACACUUAGAUCUGUACAA   UUUUUAGUGUA         AUGUAAGUGUAC U
||||| |||||| |||||||||||||||||||||||||   |||||||||||         |||||||||||| U
GAAAA UGACAA CUAAGCAUGUGAAUCUGGACAUGUU   AAAAAUCACAU         UAUAUUUAUAUG G
     G      -                         -AU           AUAUAUAUA            U
Stem-loop sequence CUUUUAACUGUUUGAUUCGUACACUUAGAUCUGUACAACAUUUUUUAGUGUACAGAUGUAAGUGUACGUUGUGUAUAUUUAUAUAUAUAUAUAUACACUAAAAAUAUUGUACAGGUCUAAGUGUACGAAUCAACAGUGAAAAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_179830.1
ncRNA:20   AACUAAGCAUGUGAAUCUGG   1
  ||||||||||||||||||==
targets:355   UUGAUUCGUACACUUAGAUU   374

2.5 Arabidopsis thaliana basic helix-loop-helix (bHLH) DNA-binding superfamily protein partial mRNA basic helix-loop-helix (bHLH) DNA-binding superfamily protein(AT2G31215) coding protein psRNATarget