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BaseInfo

ncRNA ID	novel_bna_miR85
Species	Brassica napus
Class	miRNA
Genome position	ChrC2:32495111-32495293 [+]
Reference genome	Brassica_napus_assembly_v1.0
Source	SRR527230;SRR527229
Length	21
Mature sequence(if miRNA)	1 - AAGUAUCAAGCCCUUUCACCG - 21
Stem-loop(if miRNA)	--                   C   C   UGUACCCU    C   CUCUCCA            AC              ---U   C    G   AAGUAUCAAGCCCUUUCAC GCC GAA        UCUC GUU       GUCGCAACCGCC  AAACUCCAACCAGU    CAA UUCC G   ||||||||||||||||||| ||| |||        |||| |||       ||||||||||||  ||||||||||||||    ||| ||||   UUCAUAGUUCGGGAGAGUG CGG CUU        AGAG CGA       CAGCGUUGGUGG  UUUGGGGUUGGUCA    GUU GAGG U CU                   U   U   CUCUUACU    A   AAAAAAA            AC              UGGU   U    U
Stem-loop sequence	AAGUAUCAAGCCCUUUCACCGCCCGAAUGUACCCUUCUCCGUUCUCUCCAGUCGCAACCGCCACAAACUCCAACCAGUUCAACUUCCGGUUGGAGUUUGUGGUACUGGUUGGGGUUUCAGGUGGUUGCGACAAAAAAAAGCAGAGAUCAUUCUCUUCUGGCUGUGAGAGGGCUUGAUACUUUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_013813836.1	ncRNA:21   GCCACUUUCCCGAACUAUGAA   1   =****|||||||||||||||| targets:259   UCUCAAAAGGGCUUGAUACUU   279 Target Full Sequence	3.0	PREDICTED: Brassica napus superkiller viralicidic activity 2-like 2 (LOC106373696), mRNA	superkiller viralicidic activity 2-like 2(LOC106373696)	coding protein	psRNATarget
XM_013813834.1	ncRNA:21   GCCACUUUCCCGAACUAUGAA   1   =****|||||||||||||||| targets:259   UCUCAAAAGGGCUUGAUACUU   279 Target Full Sequence	3.0	PREDICTED: Brassica napus superkiller viralicidic activity 2-like 2 (LOC106373695), mRNA	superkiller viralicidic activity 2-like 2(LOC106373695)	coding protein	psRNATarget
XM_013817074.1	ncRNA:21   GCCACUUUCCCGAACUAUGAA   1   =****|||||||||||||||| targets:1091   UCUCAAAAGGGCUUGAUACUU   1111 Target Full Sequence	3.0	PREDICTED: Brassica napus superkiller viralicidic activity 2-like 2 (LOC106376939), mRNA	superkiller viralicidic activity 2-like 2(LOC106376939)	coding protein	psRNATarget