Search result

BaseInfo

ncRNA ID	novel_bna_miR83
Species	Brassica napus
Class	miRNA
Genome position	ChrC1:1283521-1283688 [+]
Reference genome	Brassica_napus_assembly_v1.0
Source	SRR527230
Length	23
Mature sequence(if miRNA)	146 - UAAGAAUCCCACUCUAAGAACCC - 168
Stem-loop(if miRNA)	--     A  GA  AA       U  U          ACUGUUUC                    G                   UA   GUUCU AG  UG  GUUCUUA CG AAGUUAAGAA        UUAACUUUUAACUAAAAAAA CUAAGAACCGGUUCUUAAA  A   ||||| ||  ||  ||||||| || ||||||||||        |||||||||||||||||||| |||||||||||||||||||  G   CAAGA UC  AC  UAAGAAU GC UUUAAUUCUU        AAUUGAAAAUUGAUUUUUUU GAUUCUUGGCCAAGAAUUU  G CC     A  UC  CC       C  C          ------AA                    -                   CA
Stem-loop sequence	GUUCUAAGGAUGAAGUUCUUAUCGUAAGUUAAGAAACUGUUUCUUAACUUUUAACUAAAAAAAGCUAAGAACCGGUUCUUAAAUAAGGACUUUAAGAACCGGUUCUUAGUUUUUUUAGUUAAAAGUUAAAAUUCUUAAUUUCCGCUAAGAAUCCCACUCUAAGAACCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_013891153.1	ncRNA:23   CCCAAGA-AUCUCACCCUAAGAAU   1   *||*|||-||*||||||||||||| targets:491   UGGCUCUGUACAGUGGGAUUCUUA   514 Target Full Sequence	3.0	PREDICTED: Brassica napus uncharacterized LOC106449388 (LOC106449388), mRNA	uncharacterized LOC106449388(LOC106449388)	coding protein	psRNATarget