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BaseInfo

ncRNA ID	novel_bna_miR78
Species	Brassica napus
Class	miRNA
Genome position	ChrA1:30083673-30083822 [+]
Reference genome	Brassica_napus_assembly_v1.0
Source	SRR527230
Length	24
Mature sequence(if miRNA)	1 - AAGAGCAUCUCCAACCCCACUCCA - 24
Stem-loop(if miRNA)	--A       C  C                      ------------CA              A           UCAAU    AGAGCAU UC AACCCCACUCCAUAAUUUGCUG              AAAUGGAGUGAUGA CAAACAAAAAA     U    ||||||| || ||||||||||||||||||||||              |||||||||||||| |||||||||||    UCUCGUA AG UUGGGGUGAGGUAUUAAAUGAC              UUUACCUCACUACU GUUUGUUUUUU     A GAA       A  A                      AUUUUACCUCACCC              G           UACUC
Stem-loop sequence	AAGAGCAUCUCCAACCCCACUCCAUAAUUUGCUGCAAAAUGGAGUGAUGAACAAACAAAAAAUCAAUUACUCAUUUUUUUGUUUGGUCAUCACUCCAUUUCCCACUCCAUUUUACAGUAAAUUAUGGAGUGGGGUUAGAAAUGCUCUAAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_013878482.1	ncRNA:24   ACCUCACCCCAACCUCUACGAGAA   1   |*|||**||||||||||||||||| targets:73   UAGAGGUGGGUUGGAGAUGCUCUU   96 Target Full Sequence	2.0	PREDICTED: Brassica napus lecithin-cholesterol acyltransferase-like 4 (LOC106437573), mRNA	lecithin-cholesterol acyltransferase-like 4(LOC106437573)	coding protein	psRNATarget
XM_013885865.1	ncRNA:24   ACCU----CACCCCAACCUCUACGAGAA   1   ||||----|**||||||||||||||||| targets:753   UGGAAAUAGAUGGGUUGGAGAUGCUCUU   780 Target Full Sequence	2.0	PREDICTED: Brassica napus probable serine/threonine-protein kinase At4g35230 (LOC106444387), mRNA	probable serine/threonine-protein kinase At4g35230(LOC106444387)	coding protein	psRNATarget
XM_013798333.1	ncRNA:24   ACCUCACCCCAACCUCUACGAGAA   1   |||**|||*|||*||||||||||| targets:1302   UGGUUUGGAGUUUGAGAUGCUCUU   1325 Target Full Sequence	2.5	PREDICTED: Brassica napus pollen-specific protein SF21-like (LOC106358518), mRNA	pollen-specific protein SF21-like(LOC106358518)	coding protein	psRNATarget