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BaseInfo

ncRNA ID	novel_bna_miR72
Species	Brassica napus
Class	miRNA
Genome position	ChrA9:6438072-6438170 [+]
Reference genome	Brassica_napus_assembly_v1.0
Source	SRR527230;SRR527236;SRR1363495;SRR1363496;SRR521271;SRR524726;SRR527228;SRR527229
Length	21
Mature sequence(if miRNA)	79 - UGCCAAAGGAGAGUUGCCCUG - 99
Stem-loop(if miRNA)	--     U      A      C A     U    UGUGCUCUUUUUUUGU   GGGCA CUUUCU UUGGCA G GACAG GAGA                G   ||||| |||||| |||||| | ||||| ||||   CCCGU GAGAGG AACCGU C CUGUC UCGG                U GU     U      A      U A     -    UUCAUCGGUACUUGUG
Stem-loop sequence	GGGCAUCUUUCUAUUGGCACGAGACAGUGAGAUGUGCUCUUUUUUUGUGUGUGUUCAUGGCUACUUGGCUCUGUCACUUGCCAAAGGAGAGUUGCCCUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_013863849.1	ncRNA:21   GUCCCGUUGAGAGGAAACCGU   1   =|||||||*|||||||||||| targets:420   UAGGGCAAAUCUCCUUUGGCA   440 Target Full Sequence	1.5	PREDICTED: Brassica napus probable ubiquitin-conjugating enzyme E2 24 (LOC106423068), mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC106423068)	coding protein	psRNATarget
XM_013889066.1	ncRNA:21   GUCCCGUUGAGAGGAAACCGU   1   =*||||||*|||||||||||| targets:496   UUGGGCAAAUCUCCUUUGGCA   516 Target Full Sequence	1.5	PREDICTED: Brassica napus probable ubiquitin-conjugating enzyme E2 24 (LOC106447193), mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC106447193)	coding protein	psRNATarget
XM_013818926.1	ncRNA:21   GUCCCGUUGAGAGGAAACCGU   1   =**||||=||||||||||||| targets:478   UUCGGCAGCUCUCCUUUGGCA   498 Target Full Sequence	2.0	PREDICTED: Brassica napus protein FD-like (LOC106378867), mRNA	protein FD-like(LOC106378867)	coding protein	psRNATarget
XM_013819305.1	ncRNA:21   GUCCCGUUGAGAGGAAACCGU   1   *|*||*||||||||||||||| targets:1959   AAAGGAAACUCUCCUUUGGCA   1979 Target Full Sequence	2.0	PREDICTED: Brassica napus protein HOTHEAD-like (LOC106379312), mRNA	protein HOTHEAD-like(LOC106379312)	coding protein	psRNATarget
XM_013863849.1	ncRNA:21   GUCCCGUUGAGAGGAAACCGU   1   |||*||||*|||||||||||| targets:714   CAGAGCAAAUCUCCUUUGGCA   734 Target Full Sequence	2.5	PREDICTED: Brassica napus probable ubiquitin-conjugating enzyme E2 24 (LOC106423068), mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC106423068)	coding protein	psRNATarget
XM_013863849.1	ncRNA:21   GUCCCGUUGAGAGGAAACCGU   1   |=|*||||*|||||||||||| targets:657   CGGAGCAAAUCUCCUUUGGCA   677 Target Full Sequence	2.5	PREDICTED: Brassica napus probable ubiquitin-conjugating enzyme E2 24 (LOC106423068), mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC106423068)	coding protein	psRNATarget
XM_013863849.1	ncRNA:21   GUCCCGUUGAGAGGAAACCGU   1   ==|||||**|||||||||||| targets:514   UGGGGCAUAUCUCCUUUGGCA   534 Target Full Sequence	2.5	PREDICTED: Brassica napus probable ubiquitin-conjugating enzyme E2 24 (LOC106423068), mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC106423068)	coding protein	psRNATarget
XM_013863849.1	ncRNA:21   GUCCCGUUGAGAGGAAACCGU   1   =**|||||*|||||||||||| targets:595   UUCGGCAAAUCUCCUUUGGCA   615 Target Full Sequence	2.5	PREDICTED: Brassica napus probable ubiquitin-conjugating enzyme E2 24 (LOC106423068), mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC106423068)	coding protein	psRNATarget
XM_013889066.1	ncRNA:21   GUCCCGUUGAGAGGAAACCGU   1   |||*||||*|||||||||||| targets:791   CAGAGCAAAUCUCCUUUGGCA   811 Target Full Sequence	2.5	PREDICTED: Brassica napus probable ubiquitin-conjugating enzyme E2 24 (LOC106447193), mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC106447193)	coding protein	psRNATarget
XM_013889066.1	ncRNA:21   GUCCCGUUGAGAGGAAACCGU   1   |=|*||||*|||||||||||| targets:734   CGGAGCAAAUCUCCUUUGGCA   754 Target Full Sequence	2.5	PREDICTED: Brassica napus probable ubiquitin-conjugating enzyme E2 24 (LOC106447193), mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC106447193)	coding protein	psRNATarget
XM_013889066.1	ncRNA:21   GUCCCGUUGAGAGGAAACCGU   1   ==|||||**|||||||||||| targets:591   UGGGGCAUAUCUCCUUUGGCA   611 Target Full Sequence	2.5	PREDICTED: Brassica napus probable ubiquitin-conjugating enzyme E2 24 (LOC106447193), mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC106447193)	coding protein	psRNATarget
XM_013889066.1	ncRNA:21   GUCCCGUUGAGAGGAAACCGU   1   =**|||||*|||||||||||| targets:672   UUCGGCAAAUCUCCUUUGGCA   692 Target Full Sequence	2.5	PREDICTED: Brassica napus probable ubiquitin-conjugating enzyme E2 24 (LOC106447193), mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC106447193)	coding protein	psRNATarget