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BaseInfo

ncRNA ID novel_bna_miR65
Species Brassica napus
Class miRNA
Genome position ChrA8:6231028-6231110 [+]
Reference genome Brassica_napus_assembly_v1.0
Source SRR527230;SRR527231;SRR527234;SRR1363495;SRR1363496;SRR524726;SRR527229
Length 21
Mature sequence(if miRNA) 1 - UGCCUGGCUCCCUGUAUACCA - 21
Stem-loop(if miRNA) --   C     C -           A   AAACAC    C  A
  UGC UGGCU C CUGUAUACCAC AGC      CGAU UC U
  ||| ||||| | ||||||||||| |||      |||| || U
  ACG ACUGA G GAUAUGUGGUG UCG      GCUA AG A
GU   A     U A           A   ---CUA    A  U
Stem-loop sequence UGCCUGGCUCCCUGUAUACCACAAGCAAACACCGAUCUCAUUAUGAAAUCGAUCGCUAGUGGUGUAUAGAGUAGUCAAGCAUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_013830883.1
ncRNA:21   ACCAUAUGUCCCUCGGUCCGU   1
  *|||*||||||||||||||||
targets:224   GGGUUUACAGGGAGCCAGGCA   244

1.0 PREDICTED: Brassica napus auxin response factor 16-like (LOC106390396), mRNA auxin response factor 16-like(LOC106390396) coding protein psRNATarget
XM_013884453.1
ncRNA:21   ACCAUAUGUCCCUCGGUCCGU   1
  *|||*||||||||||||||||
targets:1506   GGGUUUACAGGGAGCCAGGCA   1526

1.0 PREDICTED: Brassica napus auxin response factor 16-like (LOC106442809), mRNA auxin response factor 16-like(LOC106442809) coding protein psRNATarget
XM_013830782.1
ncRNA:21   ACCAUAUGUCCCUCGGUCCGU   1
  *|||*||||||||||||||||
targets:1490   GGGUUUACAGGGAGCCAGGCA   1510

1.0 PREDICTED: Brassica napus auxin response factor 16-like (LOC106390311), mRNA auxin response factor 16-like(LOC106390311) coding protein psRNATarget
XM_013892562.1
ncRNA:21   ACCAUAUGUCCCUCGGUCCGU   1
  *|||*||||||||||||||||
targets:1524   GGGUUUACAGGGAGCCAGGCA   1544

1.0 PREDICTED: Brassica napus auxin response factor 16-like (LOC106450799), mRNA auxin response factor 16-like(LOC106450799) coding protein psRNATarget
XM_013852053.1
ncRNA:21   ACCAUAUGUCCCUCGGUCCGU   1
  *|||*||||||||||||||||
targets:1497   GGGUUUACAGGGAGCCAGGCA   1517

1.0 PREDICTED: Brassica napus auxin response factor 16 (LOC106411312), mRNA auxin response factor 16(LOC106411312) coding protein psRNATarget
XM_013836968.1
ncRNA:21   ACCAUAUGUCCCUCGGUCCGU   1
  *||*|||||||||||||||||
targets:1529   AGGAAUACAGGGAGCCAGGCA   1549

1.0 PREDICTED: Brassica napus auxin response factor 10 (LOC106396551), mRNA auxin response factor 10(LOC106396551) coding protein psRNATarget
XM_013793213.1
ncRNA:21   ACCAUAUGUCCCUCGGUCCGU   1
  |||*||=||||||||||||||
targets:1313   UGGCAUGCAGGGAGCCAGGCA   1333

2.0 PREDICTED: Brassica napus auxin response factor 17-like (LOC106353451), mRNA auxin response factor 17-like(LOC106353451) coding protein psRNATarget
XM_013809033.1
ncRNA:21   ACCAUAUGUCCCUCGGUCCGU   1
  |||*||=||||||||||||||
targets:1324   UGGCAUGCAGGGAGCCAGGCA   1344

2.0 PREDICTED: Brassica napus auxin response factor 17-like (LOC106368952), mRNA auxin response factor 17-like(LOC106368952) coding protein psRNATarget
XM_013878072.1
ncRNA:21   ACCAUAUGUCCCUCGGUCCGU   1
  |||*||=||||||||||||||
targets:1362   UGGCAUGCAGGGAGCCAGGCA   1382

2.0 PREDICTED: Brassica napus auxin response factor 18-like (LOC106437151), mRNA auxin response factor 18-like(LOC106437151) coding protein psRNATarget
XM_013840650.1
ncRNA:21   ACCAUAUGUCCCUCGGUCCGU   1
  *||*||=||||||||||||||
targets:319   CGGCAUGCAGGGAGCCAGGCA   339

2.0 PREDICTED: Brassica napus auxin response factor 17-like (LOC106400269), transcript variant X1, mRNA auxin response factor 17-like(LOC106400269) coding protein psRNATarget
XM_013840662.1
ncRNA:21   ACCAUAUGUCCCUCGGUCCGU   1
  *||*||=||||||||||||||
targets:1367   CGGCAUGCAGGGAGCCAGGCA   1387

2.0 PREDICTED: Brassica napus auxin response factor 17-like (LOC106400284), mRNA auxin response factor 17-like(LOC106400284) coding protein psRNATarget
XM_013794565.1
ncRNA:21   ACCAUAUGUCCCUCGGUCCGU   1
  *||*||*||||||||||||||
targets:1381   CGGCAUCCAGGGAGCCAGGCA   1401

2.0 PREDICTED: Brassica napus auxin response factor 17-like (LOC106354590), mRNA auxin response factor 17-like(LOC106354590) coding protein psRNATarget
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