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BaseInfo

ncRNA ID novel_bna_miR61
Species Brassica napus
Class miRNA
Genome position ChrA8:2767865-2768030 [+]
Reference genome Brassica_napus_assembly_v1.0
Source SRR527230;SRR527234
Length 21
Mature sequence(if miRNA) 1 - AAAUGCUCCAAUGUAUACCUC - 21
Stem-loop(if miRNA) --                A    A           CA       A                 AUAU       -CCA      A
  AAAUGCUCCAAUGUAU CCUC AUAAUAGAGUU  UCUAUUU UAGAGGAAAAUAUAGAG    GUUAUUU    CCUCUA A
  |||||||||||||||| |||| |||||||||||  ||||||| |||||||||||||||||    |||||||    ||||||
  UUUACGAGGUUACAUA GGAG UAUUAUCUCAA  AGAUAAA AUCUCUUUUUAUAUCUC    UAAUAAA    GGAGAU U
CU                C    A           AG       -                 CUUU       AAAC      A
Stem-loop sequence AAAUGCUCCAAUGUAUACCUCAAUAAUAGAGUUCAUCUAUUUAUAGAGGAAAAUAUAGAGAUAUGUUAUUUCCACCUCUAAAUAUAGAGGCAAAAAAUAAUUUUCCUCUAUAUUUUUCUCUAAAAUAGAGAAACUCUAUUAUAGAGGCAUACAUUGGAGCAUUUUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_013818358.1
ncRNA:21   CUCCAUAUGUAACCUCGUAAA   1
  *|*||=|*|||||||||||||
targets:781   AAUGUGUUCAUUGGAGCAUUU   801

3.0 PREDICTED: Brassica napus putative wall-associated receptor kinase-like 16 (LOC106378189), mRNA putative wall-associated receptor kinase-like 16(LOC106378189) coding protein psRNATarget