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BaseInfo

ncRNA ID	novel_bna_miR49
Species	Brassica napus
Class	miRNA
Genome position	ChrA6:615989-616068 [+]
Reference genome	Brassica_napus_assembly_v1.0
Source	SRR527230;SRR538151;SRR538225
Length	20
Mature sequence(if miRNA)	61 - GCAAGUUGACUUUGGCUCUG - 80
Stem-loop(if miRNA)	--         A          ACUAUACCA      C   UG   GAGCCAAAG UGACUUGCCG         ACCAAU UCA  A   ||||||||| ||||||||||         |||||| |||   CUCGGUUUC GUUGAACGGC         UGGUUA AGU  A GU         A          ------CAG      U   CA
Stem-loop sequence	GAGCCAAAGAUGACUUGCCGACUAUACCAACCAAUCUCAUGAAACUGAUAUUGGUGACCGGCAAGUUGACUUUGGCUCUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_013812292.1	ncRNA:20   GUCUCGGUUUCAGUUGAACG   1   *||||*||||*||||||||| targets:394   AAGAGGCAAAUUCAACUUGC   413 Target Full Sequence	2.5	PREDICTED: Brassica napus myb-related protein Zm38-like (LOC106372146), transcript variant X5, mRNA	myb-related protein Zm38-like(LOC106372146)	coding protein	psRNATarget
XM_013808121.1	ncRNA:20   GUCUCGGUUUCAGUUGAACG   1   *||||*||||*||||||||| targets:273   AAGAGGCAAAUUCAACUUGC   292 Target Full Sequence	2.5	PREDICTED: Brassica napus transcription factor MYB34-like (LOC106368213), transcript variant X1, mRNA	transcription factor MYB34-like(LOC106368213)	coding protein	psRNATarget
XM_013808122.1	ncRNA:20   GUCUCGGUUUCAGUUGAACG   1   *||||*||||*||||||||| targets:306   AAGAGGCAAAUUCAACUUGC   325 Target Full Sequence	2.5	PREDICTED: Brassica napus transcription factor MYB34-like (LOC106368213), transcript variant X2, mRNA	transcription factor MYB34-like(LOC106368213)	coding protein	psRNATarget
KC966734.1	ncRNA:20   GUCUCGGUUUCAGUUGAACG   1   *||||*||||*||||||||| targets:300   AAGAGGCAAAUUCAACUUGC   319 Target Full Sequence	2.5	Brassica napus MYB transcription factor 16 (MYB16.1) mRNA, complete cds	NA	coding protein	psRNATarget
NM_001316195.1	ncRNA:20   GUCUCGGUUUCAGUUGAACG   1   *||||*||||*||||||||| targets:300   AAGAGGCAAAUUCAACUUGC   319 Target Full Sequence	2.5	Brassica napus transcription factor MYB34-like (LOC106367183), mRNA	transcription factor MYB34-like(LOC106367183)	coding protein	psRNATarget
XM_013865405.1	ncRNA:20   GUCUCGGUUUCAGUUGAACG   1   *||||*||||*||||||||| targets:331   AAGAGGCAAAUUCAACUUGC   350 Target Full Sequence	2.5	PREDICTED: Brassica napus myb-related protein Hv1-like (LOC106424645), mRNA	myb-related protein Hv1-like(LOC106424645)	coding protein	psRNATarget
XM_013812291.1	ncRNA:20   GUCUCGGUUUCAGUUGAACG   1   *||||*||||*||||||||| targets:394   AAGAGGCAAAUUCAACUUGC   413 Target Full Sequence	2.5	PREDICTED: Brassica napus myb-related protein Zm38-like (LOC106372146), transcript variant X4, mRNA	myb-related protein Zm38-like(LOC106372146)	coding protein	psRNATarget
XM_013812290.1	ncRNA:20   GUCUCGGUUUCAGUUGAACG   1   *||||*||||*||||||||| targets:396   AAGAGGCAAAUUCAACUUGC   415 Target Full Sequence	2.5	PREDICTED: Brassica napus myb-related protein Zm38-like (LOC106372146), transcript variant X3, mRNA	myb-related protein Zm38-like(LOC106372146)	coding protein	psRNATarget
XM_013884717.1	ncRNA:20   GUCUCGGUUUCAGUUGAACG   1   *||||*||||*||||||||| targets:332   AAGAGGCAAAUUCAACUUGC   351 Target Full Sequence	2.5	PREDICTED: Brassica napus myb-related protein Hv1-like (LOC106443121), mRNA	myb-related protein Hv1-like(LOC106443121)	coding protein	psRNATarget
XM_013812289.1	ncRNA:20   GUCUCGGUUUCAGUUGAACG   1   *||||*||||*||||||||| targets:394   AAGAGGCAAAUUCAACUUGC   413 Target Full Sequence	2.5	PREDICTED: Brassica napus myb-related protein Zm38-like (LOC106372146), transcript variant X2, mRNA	myb-related protein Zm38-like(LOC106372146)	coding protein	psRNATarget
XM_013812288.1	ncRNA:20   GUCUCGGUUUCAGUUGAACG   1   *||||*||||*||||||||| targets:395   AAGAGGCAAAUUCAACUUGC   414 Target Full Sequence	2.5	PREDICTED: Brassica napus myb-related protein Zm38-like (LOC106372146), transcript variant X1, mRNA	myb-related protein Zm38-like(LOC106372146)	coding protein	psRNATarget
XM_013806902.1	ncRNA:20   GUCUCGGUUUCAGUUGAACG   1   *||||*||||*||||||||| targets:382   AAGAGGCAAAUUCAACUUGC   401 Target Full Sequence	2.5	PREDICTED: Brassica napus transcription factor MYB34-like (LOC106367183), transcript variant X1, mRNA	transcription factor MYB34-like(LOC106367183)	coding protein	psRNATarget
XM_013884731.1	ncRNA:20   GUCUCGGUUUCAGUUGAACG   1   *||||*||||*||||||||| targets:377   AAGAGGCAAAUUCAACUUGC   396 Target Full Sequence	2.5	PREDICTED: Brassica napus myb-related protein Hv1-like (LOC106443137), mRNA	myb-related protein Hv1-like(LOC106443137)	coding protein	psRNATarget