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BaseInfo

ncRNA ID	novel_bna_miR44
Species	Brassica napus
Class	miRNA
Genome position	ChrA5:11748552-11748672 [-]
Reference genome	Brassica_napus_assembly_v1.0
Source	SRR1363495;SRR1363496;SRR2015555
Length	23
Mature sequence(if miRNA)	1 - AGAAGUUGGAGAUGGUGGAGAUA - 23
Stem-loop(if miRNA)	--     CU -     CU  C          -  UU     U  -U     U  -U     UG   UCUCU  C UCUCU  CU UCUUUAAAGA AG  GGAGA GG  GGAGA AA  GGAGA  G   |||||  | |||||  || |||||||||| ||  ||||| ||  ||||| ||  |||||   AGAGG  G AGAGG  GA AGAAAUUUCU UC  UCUCU UC  UCUCU UU  UCUCU  C AU     UG U     UU  -          C  UC     C  UC     C  UC     CU
Stem-loop sequence	UCUCUCUCUCUCUCUCUCUCUUUAAAGAAGUUGGAGAUGGUGGAGAUAAUGGAGAUGGCUCUCUCUCUUUCUCUCUCUCUCUCUCUCUCUCUCUUUAAAGAAGUUGGAGAUGGUGGAGAUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_013849604.1	ncRNA:23   AUAGAGGUGGUAGAGGUUGAAGA   1   **||*|||||||||||||||||| targets:1174   CUUCCCCACCAUCUCCAACUUCU   1196 Target Full Sequence	1.0	PREDICTED: Brassica napus uncharacterized LOC106408919 (LOC106408919), mRNA	uncharacterized LOC106408919(LOC106408919)	coding protein	psRNATarget
XM_013848808.1	ncRNA:23   AUAGAGGUGGUAGAGGUUGAAGA   1   **|=|||||||||||||*||||| targets:63   CUUUUCCACCAUCUCCACCUUCU   85 Target Full Sequence	1.5	PREDICTED: Brassica napus uncharacterized LOC106407970 (LOC106407970), mRNA	uncharacterized LOC106407970(LOC106407970)	coding protein	psRNATarget
XM_013818638.1	ncRNA:23   AUAGAGGUGGUAGAGGUUGAAGA   1   *|*||||||||||||||*||||| targets:620   AAACUCCACCAUCUCCACCUUCU   642 Target Full Sequence	1.5	PREDICTED: Brassica napus uncharacterized LOC106378523 (LOC106378523), mRNA	uncharacterized LOC106378523(LOC106378523)	coding protein	psRNATarget
XM_013805446.1	ncRNA:23   AUAGAGGUGGUAGAGGUUGAAGA   1   **||||||=||||||||*||||| targets:171   CUUCUCCAUCAUCUCCACCUUCU   193 Target Full Sequence	2.5	PREDICTED: Brassica napus pentatricopeptide repeat-containing protein At4g19890 (LOC106365927), mRNA	pentatricopeptide repeat-containing protein At4g19890(LOC106365927)	coding protein	psRNATarget
XM_013896049.1	ncRNA:23   AUAGAGGUGGUAGAGGUUGAAGA   1   **|=|||||=|||||||*||||| targets:3393   CUUUUCCACUAUCUCCACCUUCU   3415 Target Full Sequence	2.5	PREDICTED: Brassica napus probable beta-D-xylosidase 6 (LOC106453848), mRNA	probable beta-D-xylosidase 6(LOC106453848)	coding protein	psRNATarget
XM_013848685.1	ncRNA:23   AUAGAGGUGGUAGAGGUUGAAGA   1   **|=|||||=|||||||*||||| targets:374   CUUUUCCACUAUCUCCACCUUCU   396 Target Full Sequence	2.5	PREDICTED: Brassica napus verprolin-like (LOC106407823), mRNA	verprolin-like(LOC106407823)	coding protein	psRNATarget
XM_013848685.1	ncRNA:23   AUAGAGGUGGUAGAGGUUGAAGA   1   **|=|||||=|||||||*||||| targets:1031   CUUUUCCACUAUCUCCACCUUCU   1053 Target Full Sequence	2.5	PREDICTED: Brassica napus verprolin-like (LOC106407823), mRNA	verprolin-like(LOC106407823)	coding protein	psRNATarget
XM_013822202.1	ncRNA:23   AUAGAGGUGGUAGAGGUUGAAGA   1   *|||*=||=|||||||||||||| targets:166   CAUCAUCAUCAUCUCCAACUUCU   188 Target Full Sequence	3.0	PREDICTED: Brassica napus 30S ribosomal protein S20, chloroplastic-like (LOC106381924), mRNA	30S ribosomal protein S20, chloroplastic-like(LOC106381924)	coding protein	psRNATarget
XM_013841620.1	ncRNA:23   AUAGAGGUGGUAGAGGUUGAAGA   1   *=||*=||=|||||||||||||| targets:171   CGUCGUCAUCAUCUCCAACUUCU   193 Target Full Sequence	3.0	PREDICTED: Brassica napus 30S ribosomal protein S20, chloroplastic (LOC106401165), mRNA	30S ribosomal protein S20, chloroplastic(LOC106401165)	coding protein	psRNATarget
XM_013846517.1	ncRNA:23   AUAGAGGUGGUAGAGGUUGAAGA   1   **||*=||=|||||||||||||| targets:169   CUUCGUCAUCAUCUCCAACUUCU   191 Target Full Sequence	3.0	PREDICTED: Brassica napus 30S ribosomal protein S20, chloroplastic-like (LOC106405949), mRNA	30S ribosomal protein S20, chloroplastic-like(LOC106405949)	coding protein	psRNATarget
XM_013789366.1	ncRNA:23   AUAGAGGUGGUAGAGGUUGAAGA   1   **||*=||=|||||||||||||| targets:145   CUUCAUCAUCAUCUCCAACUUCU   167 Target Full Sequence	3.0	PREDICTED: Brassica napus 30S ribosomal protein S20, chloroplastic-like (LOC106349409), mRNA	30S ribosomal protein S20, chloroplastic-like(LOC106349409)	coding protein	psRNATarget
XM_013804313.1	ncRNA:23   AUAGAGGUGGUAGAGGUUGAAGA   1   |*|||=|*||||||||||||||* targets:52   UCUCUUCCCCAUCUCCAACUUCA   74 Target Full Sequence	3.0	PREDICTED: Brassica napus macrophage migration inhibitory factor homolog (LOC106364820), mRNA	macrophage migration inhibitory factor homolog(LOC106364820)	coding protein	psRNATarget