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BaseInfo

ncRNA ID	novel_bna_miR39
Species	Brassica napus
Class	miRNA
Genome position	ChrA5:27569213-27569323 [-]
Reference genome	Brassica_napus_assembly_v1.0
Source	SRR527230;SRR527236;SRR527228
Length	21
Mature sequence(if miRNA)	1 - UGCCAAAGGAGAUUUGCCCAG - 21
Stem-loop(if miRNA)	--        A    A       -AU   UUUCACUA   C       U   AAUA   GGGCAAAU CUCC UUGGCAG   AGU        CAU UAUAUUA CUA    U   |||||||| |||| |||||||   |||        ||| ||||||| |||    U   CCCGUUUA GAGG AACCGUC   UCG        GUA GUAUAGU GGU    A GA        -    A       AUU   UAAAAAAA   U       U   AAUA
Stem-loop sequence	GGGCAAAUACUCCAUUGGCAGAUAGUUUUCACUACAUCUAUAUUAUCUAAAUAUUAAUAAUGGUUGAUAUGUAUGAAAAAAAUGCUUUACUGCCAAAGGAGAUUUGCCCAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_013889066.1	ncRNA:21   GACCCGUUUAGAGGAAACCGU   1   =|||||||||||||||||||| targets:496   UUGGGCAAAUCUCCUUUGGCA   516 Target Full Sequence	0.0	PREDICTED: Brassica napus probable ubiquitin-conjugating enzyme E2 24 (LOC106447193), mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC106447193)	coding protein	psRNATarget
XM_013889066.1	ncRNA:21   GACCCGUUUAGAGGAAACCGU   1   =|*|||||||||||||||||| targets:672   UUCGGCAAAUCUCCUUUGGCA   692 Target Full Sequence	1.0	PREDICTED: Brassica napus probable ubiquitin-conjugating enzyme E2 24 (LOC106447193), mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC106447193)	coding protein	psRNATarget
XM_013889066.1	ncRNA:21   GACCCGUUUAGAGGAAACCGU   1   |*|*||||||||||||||||| targets:791   CAGAGCAAAUCUCCUUUGGCA   811 Target Full Sequence	1.0	PREDICTED: Brassica napus probable ubiquitin-conjugating enzyme E2 24 (LOC106447193), mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC106447193)	coding protein	psRNATarget
XM_013863849.1	ncRNA:21   GACCCGUUUAGAGGAAACCGU   1   =|*|||||||||||||||||| targets:595   UUCGGCAAAUCUCCUUUGGCA   615 Target Full Sequence	1.0	PREDICTED: Brassica napus probable ubiquitin-conjugating enzyme E2 24 (LOC106423068), mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC106423068)	coding protein	psRNATarget
XM_013863849.1	ncRNA:21   GACCCGUUUAGAGGAAACCGU   1   |*|*||||||||||||||||| targets:714   CAGAGCAAAUCUCCUUUGGCA   734 Target Full Sequence	1.0	PREDICTED: Brassica napus probable ubiquitin-conjugating enzyme E2 24 (LOC106423068), mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC106423068)	coding protein	psRNATarget
XM_013889066.1	ncRNA:21   GACC-CGUUUAGAGGAAACCGU   1   =*||-||||||||||||||||| targets:733   UCGGAGCAAAUCUCCUUUGGCA   754 Target Full Sequence	2.0	PREDICTED: Brassica napus probable ubiquitin-conjugating enzyme E2 24 (LOC106447193), mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC106447193)	coding protein	psRNATarget
XM_013863849.1	ncRNA:21   GACC-CGUUUAGAGGAAACCGU   1   =*||-||||||||||||||||| targets:656   UCGGAGCAAAUCUCCUUUGGCA   677 Target Full Sequence	2.0	PREDICTED: Brassica napus probable ubiquitin-conjugating enzyme E2 24 (LOC106423068), mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC106423068)	coding protein	psRNATarget
XM_013863849.1	ncRNA:21   GA---CCCGUUUAGAGGAAACCGU   1   ||---||||||||||||||||||| targets:417   CUUUAGGGCAAAUCUCCUUUGGCA   440 Target Full Sequence	3.0	PREDICTED: Brassica napus probable ubiquitin-conjugating enzyme E2 24 (LOC106423068), mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC106423068)	coding protein	psRNATarget
XM_013890380.1	ncRNA:21   GACCCGUUUAGAGGAAACCGU   1   |*|*|||=||||||||||||= targets:177   CAGUGCAGAUCUCCUUUGGCG   197 Target Full Sequence	3.0	PREDICTED: Brassica napus tirucalladienol synthase-like (LOC106448501), mRNA	tirucalladienol synthase-like(LOC106448501)	coding protein	psRNATarget