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BaseInfo

ncRNA ID ath-miRf10549-npr
Species Arabidopsis thaliana
Class miRNA
Genome position NA
Reference genome NA
Source PNRD
Length 22
Mature sequence(if miRNA) NA - UACUCGACCUCUUGGUCGAGUG - NA
Stem-loop(if miRNA) GGUG   G         U            -AU  GA     UG  G   GA    -                    GA     U  AGUGGUGG G  GAG G         A
    AAG CACUCGACC GGGGGUCGAGUG   GU  UCGAG  GU UCA  AGAU ACUCGACUUCCAGGUUGAGU  AGAGG CG        U AU   G CACUCGACC C
    ||| ||||||||| ||||||||||||   ||  |||||  || |||  |||| ||||||||||||||||||||  ||||| ||        | ||   | |||||||||
    UUU GUGAGCUGG UCUCCAGCUCAU   CG  AGUUC  UA AGU  UCUG UGAGCUGGGGGUCCAGCUCG  UCUCC GU        A UG   U GUGAGCUGG G
-CUG   G         U            CCU  -A     --  G   UC    G                    --     U  AGUGGUGA G  AAG G         U
Stem-loop sequence GGUGAAGGCACUCGACCUGGGGGUCGAGUGAUGUGAUCGAGUGGUGUCAGAAGAUACUCGACUUCCAGGUUGAGUGAAGAGGUCGAGUGGUGGUGAUGAGGGCACUCGACCACGUGGUCGAGUGGUGAAGUGAAGUGGUGAUGUCCUCUGCUCGACCUGGGGGUCGAGUGGUCUCUUGAGAUCUUGAAGCUCCUACUCGACCUCUUGGUCGAGUGGUUUGUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EF183194.1
ncRNA:22   GUGAGCUGGUUCUCCAGCUCAU   1
  |||||*||||||||||||||||
targets:576   CACUCUACCAAGAGGUCGAGUA   597

1.0 Arabidopsis thaliana clone asmbl_2339 unknown mRNA sequence NA coding protein psRNATarget
AY227642.1
ncRNA:22   GUGAGCUGGUUCUCCAGCUCAU   1
  |||||||||*||||||||||||
targets:764   CACUCGACCCAGAGGUCGAGUA   785

1.5 Arabidopsis thaliana hypothetical protein (At2g13400/F14O4.3) mRNA, complete cds NA coding protein psRNATarget
EF183042.1
ncRNA:22   GUGAGCUGGUUCUCCAGCUCAU   1
  ||||||||||*|||||||||||
targets:1527   CACUCGACCACGAGGUCGAGUA   1548

1.5 Arabidopsis thaliana clone asmbl_11759 unknown mRNA sequence NA coding protein psRNATarget
EF183194.1
ncRNA:22   GUGAGCUGGUUCUCCAGCUCAU   1
  ||||||||||*||||||||||=
targets:517   CACUCGACCAUGAGGUCGAGUG   538

2.5 Arabidopsis thaliana clone asmbl_2339 unknown mRNA sequence NA coding protein psRNATarget
AY227642.1
ncRNA:22   GUGAGCUGGUUCUCCAGCUCAU   1
  |||||*|||*||||||||||||
targets:927   CACUCUACCUAGAGGUCGAGUA   948

2.5 Arabidopsis thaliana hypothetical protein (At2g13400/F14O4.3) mRNA, complete cds NA coding protein psRNATarget
NM_103391.1
ncRNA:22   GUGAGCUGGUUCUCCAGCUCAU   1
  ||||||||||*||||||||||=
targets:1151   CACUCGACCACGAGGUCGAGUG   1172

2.5 Arabidopsis thaliana DNAse I-like superfamily protein partial mRNA DNAse I-like superfamily protein(AT1G40390) coding protein psRNATarget
BT012022.1
ncRNA:22   GUGAGCUGGUUCUCCAGCUCAU   1
  |||||*|||||*||||||||||
targets:35   CACUCUACCAACAGGUCGAGUA   56

2.5 Arabidopsis thaliana At2g10890 mRNA sequence NA coding protein psRNATarget
DQ069808.1
ncRNA:22   GUGAGCUGGUUCUCCAGCUCAU   1
  |||||*|||||*||||||||||
targets:146   CACUCUACCAACAGGUCGAGUA   167

2.5 Arabidopsis thaliana At2g10880 mRNA, partial sequence NA coding protein psRNATarget
EF183192.1
ncRNA:22   GUGAGCUGGUUCUCCAGCUCAU   1
  |||||*|||||*||||||||||
targets:318   CACUCUACCAACAGGUCGAGUA   339

2.5 Arabidopsis thaliana clone asmbl_2299 unknown mRNA sequence NA coding protein psRNATarget
EF183192.1
ncRNA:22   GUGAGCUGGUUCUCCAGCUCAU   1
  |||||*|||||*||||||||||
targets:366   CACUCUACCAACAGGUCGAGUA   387

2.5 Arabidopsis thaliana clone asmbl_2299 unknown mRNA sequence NA coding protein psRNATarget
EF183192.1
ncRNA:22   GUGAGCUGGUUCUCCAGCUCAU   1
  |||||*|||||*||||||||||
targets:414   CACUCUACCAACAGGUCGAGUA   435

2.5 Arabidopsis thaliana clone asmbl_2299 unknown mRNA sequence NA coding protein psRNATarget
EF183193.1
ncRNA:22   GUGAGCUGGUUCUCCAGCUCAU   1
  |||||*|||||*||||||||||
targets:693   CACUCUACCAACAGGUCGAGUA   714

2.5 Arabidopsis thaliana clone asmbl_2300 unknown mRNA sequence NA coding protein psRNATarget
EF183193.1
ncRNA:22   GUGAGCUGGUUCUCCAGCUCAU   1
  |||||*|||||*||||||||||
targets:741   CACUCUACCAACAGGUCGAGUA   762

2.5 Arabidopsis thaliana clone asmbl_2300 unknown mRNA sequence NA coding protein psRNATarget
EF183193.1
ncRNA:22   GUGAGCUGGUUCUCCAGCUCAU   1
  |||||*|||||*||||||||||
targets:789   CACUCUACCAACAGGUCGAGUA   810

2.5 Arabidopsis thaliana clone asmbl_2300 unknown mRNA sequence NA coding protein psRNATarget
EF183191.1
ncRNA:22   GUGAGCUGGUUCUCCAGCUCAU   1
  |||||*|||||*||||||||||
targets:693   CACUCUACCAACAGGUCGAGUA   714

2.5 Arabidopsis thaliana clone asmbl_2298 unknown mRNA sequence NA coding protein psRNATarget
EF183191.1
ncRNA:22   GUGAGCUGGUUCUCCAGCUCAU   1
  |||||*|||||*||||||||||
targets:741   CACUCUACCAACAGGUCGAGUA   762

2.5 Arabidopsis thaliana clone asmbl_2298 unknown mRNA sequence NA coding protein psRNATarget
EF183191.1
ncRNA:22   GUGAGCUGGUUCUCCAGCUCAU   1
  |||||*|||||*||||||||||
targets:789   CACUCUACCAACAGGUCGAGUA   810

2.5 Arabidopsis thaliana clone asmbl_2298 unknown mRNA sequence NA coding protein psRNATarget
AY065245.1
ncRNA:22   GUGAGCUGGUUCUCCAGCUCAU   1
  |*|||||||||||||||*|||*
targets:507   CCCUCGACCAAGAGGUCUAGUU   528

2.5 Arabidopsis thaliana At5g10630 mRNA sequence NA coding protein psRNATarget
NM_203034.2
ncRNA:22   GUGAGCUGGUUCUCCAGCUCAU   1
  |*|||||||||||||||*|||*
targets:507   CCCUCGACCAAGAGGUCUAGUU   528

2.5 Arabidopsis thaliana flowering-promoting factor-like protein mRNA flowering-promoting factor-like protein(AT5G10625) coding protein psRNATarget
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