ncRNA ID | novel_bna_miR33 |
Species | Brassica napus |
Class | miRNA |
Genome position | ChrA4:23824899-23825066 [+] |
Reference genome | Brassica_napus_assembly_v1.0 |
Source | SRR527230;SRR527232;SRR527234;SRR527228;SRR527229 |
Length | 20 |
Mature sequence(if miRNA) | 1 - GAGCUUUCUUCGGUCCACUC - 20 |
Stem-loop(if miRNA) |
--     UU          CU      AUAAUAU    -         -GA    C AC        C  AA     A   AAAGAA   GAGCU  CUUCGGUCCA  CAUAGA       GUGA GAUUUAAUU   CUCU G  UCAUUCAU CA  UACCA AUG      U   |||||  ||||||||||  ||||||       |||| |||||||||   |||| |  |||||||| ||  ||||| |||   CUCGA  GAAGUCAGGU  GUAUCU       CACU CUAAGUUAA   GAGA C  AGUAAGUA GU  AUGGU UAC      A CC     GG          UC      ----CUU    U         ACA    U GU        A  AA     A   AGAUGU |
Stem-loop sequence | GAGCUUUCUUCGGUCCACUCAUAGAAUAAUAUGUGAGAUUUAAUUGACUCUCGACUCAUUCAUCCAAAUACCAAAUGAAAGAAUAUGUAGACAUAUGGUAAAUGAAUGAAUGAUGCUAGAGACAAAUUGAAUCUUCACUUCUCUAUGCUUGGACUGAAGGGAGCUCCC |