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BaseInfo

ncRNA ID	novel_bna_miR30
Species	Brassica napus
Class	miRNA
Genome position	ChrA3:20764491-20764661 [-]
Reference genome	Brassica_napus_assembly_v1.0
Source	SRR527229;SRR537602;SRR537604;SRR537612;SRR537633;SRR537657;SRR537857;SRR538067;SRR538151;SRR538225;SRR538253
Length	21
Mature sequence(if miRNA)	151 - GGAGCUUCCUUUAGUCCAUUC - 171
Stem-loop(if miRNA)	--                  U   C   UC  G U           A -  U   AC    C   C  AA  C      ACGAAAA   GGAGCUUCCUUUAGUCCA UCA AGA  AU A AUGAUCCAAUU G CU CCG  UCAU CAU CA  UA CGAGUC       U   |||||||||||||||||| ||| |||  || | ||||||||||| | || |||  |||| ||| ||  || ||||||       U   CCUCGAGGGAAGUCAGGU AGU UCU  UA U UACUAGGUUAA C GA GGC  AGUA GUA GU  AU GCUCAG       U UC                  U   C   CU  G -           A A  U   GU    A   A  AA  U      AUUCAAC
Stem-loop sequence	GGAGCUUCCUUUAGUCCAUUCACAGAUCAUGAUAUGAUCCAAUUAGCUUCCGACUCAUCCAUCCAAAUACCGAGUCACGAAAAUUUCAACUUAGACUCGUUAAAUGAAUGAAUGAUGCGGUAGACAAAUUGGAUCAUUGAUUCUCUCUGAUUGGACUGAAGGGAGCUCCCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_013828279.1	ncRNA:21   CUUACCUGAUUUCCUUCGAGG   1   **=||*||||||||||||||| targets:1135   UCGUGAACUAAAGGAAGCUCC   1155 Target Full Sequence	2.0	PREDICTED: Brassica napus ubiquinol oxidase 1a, mitochondrial-like (LOC106388251), mRNA	ubiquinol oxidase 1a, mitochondrial-like(LOC106388251)	coding protein	psRNATarget
XM_013806620.1	ncRNA:21   CUUACCUGAUUUCCUUCGAGG   1   **=||*=|||||||||||||| targets:1106   UCGUGAGCUAAAGGAAGCUCC   1126 Target Full Sequence	3.0	PREDICTED: Brassica napus ubiquinol oxidase 1a, mitochondrial-like (LOC106366938), mRNA	ubiquinol oxidase 1a, mitochondrial-like(LOC106366938)	coding protein	psRNATarget
XM_013881121.1	ncRNA:21   CUUACCUGAUUUCCUUCGAGG   1   **=||*=|||||||||||||| targets:1128   UCGUGAGCUAAAGGAAGCUCC   1148 Target Full Sequence	3.0	PREDICTED: Brassica napus ubiquinol oxidase 1a, mitochondrial-like (LOC106439632), mRNA	ubiquinol oxidase 1a, mitochondrial-like(LOC106439632)	coding protein	psRNATarget
XM_013792454.1	ncRNA:21   CUUACCUGAUUUCCUUCGAGG   1   **=||*=|||||||||||||| targets:1149   UCGUGAGCUAAAGGAAGCUCC   1169 Target Full Sequence	3.0	PREDICTED: Brassica napus ubiquinol oxidase 1a, mitochondrial-like (LOC106352817), transcript variant X2, mRNA	ubiquinol oxidase 1a, mitochondrial-like(LOC106352817)	coding protein	psRNATarget
XM_013792453.1	ncRNA:21   CUUACCUGAUUUCCUUCGAGG   1   **=||*=|||||||||||||| targets:1149   UCGUGAGCUAAAGGAAGCUCC   1169 Target Full Sequence	3.0	PREDICTED: Brassica napus ubiquinol oxidase 1a, mitochondrial-like (LOC106352817), transcript variant X1, mRNA	ubiquinol oxidase 1a, mitochondrial-like(LOC106352817)	coding protein	psRNATarget