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BaseInfo

ncRNA ID novel_bna_miR25
Species Brassica napus
Class miRNA
Genome position ChrA3:45436316-45436402 [+]
Reference genome Brassica_napus_assembly_v1.0
Source SRR527229
Length 24
Mature sequence(if miRNA) 1 - AGGGCAUCUCCAAUGCAACACUAA - 24
Stem-loop(if miRNA) --   G     C      A                   -   AG
  AGG CAUCU CAAUGC ACACUAAAAUUUACUCUAU UUU  A
  ||| ||||| |||||| ||||||||||||||||||| |||
  UCU GUAGA GUUACG UGUGAUUUUAAAUGAGAUA AAA  G
AA   G     U      A                   U   GU
Stem-loop sequence AGGGCAUCUCCAAUGCAACACUAAAAUUUACUCUAUUUUAGAGUGAAAUAUAGAGUAAAUUUUAGUGUAGCAUUGUAGAUGGUCUAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_013803034.1
ncRNA:24   AAUC--ACAACGUAACCUCUACGGGA   1
  *|||--|*||*||||||||||||||*
targets:385   GUAGGCUAUUUCAUUGGAGAUGCCCC   410

3.0 PREDICTED: Brassica napus uncharacterized LOC106363260 (LOC106363260), mRNA uncharacterized LOC106363260(LOC106363260) coding protein psRNATarget
XM_013802610.1
ncRNA:24   AAUC--ACAACGUAACCUCUACGGGA   1
  *|||--|*||*||||||||||||||*
targets:385   GUAGGCUAUUUCAUUGGAGAUGCCCC   410

3.0 PREDICTED: Brassica napus uncharacterized LOC106362763 (LOC106362763), mRNA uncharacterized LOC106362763(LOC106362763) coding protein psRNATarget