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BaseInfo

ncRNA ID	novel_bna_miR21
Species	Brassica napus
Class	miRNA
Genome position	ChrA3:36006743-36006837 [+]
Reference genome	Brassica_napus_assembly_v1.0
Source	SRR527229;SRR527230;SRR527234;SRR537605;SRR1363496;SRR2015555;SRR1363495;SRR524726
Length	21
Mature sequence(if miRNA)	75 - UCGAUAAACCUCUGCAUCCAG - 95
Stem-loop(if miRNA)	--   G    C    C       A    C   GAAAA   -AU    G   GGA GCAG GGUU AUCGAUC AUUC UGU     AUG   GUUG A   ||| |||| |||| ||||||| |||| |||     |||   ||||   CCU CGUC CCAA UAGCUAG UAAG ACG     UAC   UAAC A GA   A    U    A       C    U   AAGGG   AUU    A
Stem-loop sequence	GGAGGCAGCGGUUCAUCGAUCAAUUCCUGUGAAAAAUGAUGUUGGAAACAAUUUACAUGGGAAGCAUGAAUCGAUCGAUAAACCUCUGCAUCCAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_013810898.1	ncRNA:21   GACCUACGUCUCCA-AAUAGCU   1   ||||||||||||||-||||||| targets:3102   CUGGAUGCAGAGGUAUUAUCGA   3123 Target Full Sequence	3.0	PREDICTED: Brassica napus endoribonuclease Dicer homolog 1 (LOC106370901), mRNA	endoribonuclease Dicer homolog 1(LOC106370901)	coding protein	psRNATarget
XM_013815873.1	ncRNA:21   GACCUACGUCUCCA-AAUAGCU   1   ||||||||||||||-||||||| targets:3102   CUGGAUGCAGAGGUAUUAUCGA   3123 Target Full Sequence	3.0	PREDICTED: Brassica napus endoribonuclease Dicer homolog 1 (LOC106375864), mRNA	endoribonuclease Dicer homolog 1(LOC106375864)	coding protein	psRNATarget
XM_013841052.1	ncRNA:21   GACCUACGUCUCCA-AAUAGCU   1   ||||||||||||||-||||||| targets:3198   CUGGAUGCAGAGGUAUUAUCGA   3219 Target Full Sequence	3.0	PREDICTED: Brassica napus endoribonuclease Dicer homolog 1-like (LOC106400685), mRNA	endoribonuclease Dicer homolog 1-like(LOC106400685)	coding protein	psRNATarget
XM_013791170.1	ncRNA:21   GACCUACGUCUCCAAAUAGCU   1   ***||||*||||||||||||* targets:331   AGAGAUGGAGAGGUUUAUCGU   351 Target Full Sequence	3.0	PREDICTED: Brassica napus auxin-responsive protein SAUR41 (LOC106351360), mRNA	auxin-responsive protein SAUR41(LOC106351360)	coding protein	psRNATarget
XM_013891479.1	ncRNA:21   GACCUACGUCUCCAAAUAGCU   1   ***||||*||||||||||||* targets:331   AGAGAUGGAGAGGUUUAUCGU   351 Target Full Sequence	3.0	PREDICTED: Brassica napus auxin-responsive protein SAUR41 (LOC106449782), mRNA	auxin-responsive protein SAUR41(LOC106449782)	coding protein	psRNATarget