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BaseInfo

ncRNA ID	ath-miRf10547-npr
Species	Arabidopsis thaliana
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	23
Mature sequence(if miRNA)	NA - UACUCGACCUCUUGGUCGAGUGG - NA
Stem-loop(if miRNA)	GGUG   G         U            -AU  GA     UG  G   GA    -AC                  GA     U  AGUGGUGG G  GAG G         A     AAG CACUCGACC GGGGGUCGAGUG   GU  UCGAG  GU UCA  AGAU   UCGACUUCCAGGUUGAGU  AGAGG CG        U AU   G CACUCGACC C     ||| ||||||||| ||||||||||||   ||  |||||  || |||  ||||   ||||||||||||||||||  ||||| ||        | ||   | |||||||||     UUU GUGAGCUGG UCUCCAGCUCAU   CG  AGUUC  UA AGU  UCUG   AGCUGGGGGUCCAGCUCG  UCUCC GU        A UG   U GUGAGCUGG G -CUG   G         U            CCU  -A     --  G   UC    AUA                  --     U  AGUGGUGA G  AAG G         U
Stem-loop sequence	GGUGAAGGCACUCGACCUGGGGGUCGAGUGAUGUGAUCGAGUGGUGUCAGAAGAUACUCGACUUCCAGGUUGAGUGAAGAGGUCGAGUGGUGGUGAUGAGGGCACUCGACCACGUGGUCGAGUGGUGAAGUGAAGUGGUGAUGUCCUCUGCUCGACCUGGGGGUCGAAUAGUCUCUUGAGAUCUUGAAGCUCCUACUCGACCUCUUGGUCGAGUGGUUUGUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EF183194.1	ncRNA:23   GGUGAGCUGGUUCUCCAGCUCAU   1   =|||||*|||||||||||||||| targets:575   UCACUCUACCAAGAGGUCGAGUA   597 Target Full Sequence	1.0	Arabidopsis thaliana clone asmbl_2339 unknown mRNA sequence	NA	coding protein	psRNATarget
AY227642.1	ncRNA:23   GGUGAGCUGGUUCUCCAGCUCAU   1   ||||||||||*|||||||||||| targets:763   CCACUCGACCCAGAGGUCGAGUA   785 Target Full Sequence	1.5	Arabidopsis thaliana hypothetical protein (At2g13400/F14O4.3) mRNA, complete cds	NA	coding protein	psRNATarget
EF183042.1	ncRNA:23   GGUGAGCUGGUUCUCCAGCUCAU   1   |||||||||||*||||||||||| targets:1526   CCACUCGACCACGAGGUCGAGUA   1548 Target Full Sequence	1.5	Arabidopsis thaliana clone asmbl_11759 unknown mRNA sequence	NA	coding protein	psRNATarget
AY227642.1	ncRNA:23   GGUGAGCUGGUUCUCCAGCUCAU   1   =|||||*|||*|||||||||||| targets:926   UCACUCUACCUAGAGGUCGAGUA   948 Target Full Sequence	2.5	Arabidopsis thaliana hypothetical protein (At2g13400/F14O4.3) mRNA, complete cds	NA	coding protein	psRNATarget
EF183194.1	ncRNA:23   GGUGAGCUGGUUCUCCAGCUCAU   1   =||||||||||*||||||||||= targets:516   UCACUCGACCAUGAGGUCGAGUG   538 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_2339 unknown mRNA sequence	NA	coding protein	psRNATarget
NM_103391.1	ncRNA:23   GGUGAGCUGGUUCUCCAGCUCAU   1   |||||||||||*||||||||||= targets:1150   CCACUCGACCACGAGGUCGAGUG   1172 Target Full Sequence	2.5	Arabidopsis thaliana DNAse I-like superfamily protein partial mRNA	DNAse I-like superfamily protein(AT1G40390)	coding protein	psRNATarget
BT012022.1	ncRNA:23   GGUGAGCUGGUUCUCCAGCUCAU   1   =|||||*|||||*|||||||||| targets:34   UCACUCUACCAACAGGUCGAGUA   56 Target Full Sequence	2.5	Arabidopsis thaliana At2g10890 mRNA sequence	NA	coding protein	psRNATarget
DQ069808.1	ncRNA:23   GGUGAGCUGGUUCUCCAGCUCAU   1   =|||||*|||||*|||||||||| targets:145   UCACUCUACCAACAGGUCGAGUA   167 Target Full Sequence	2.5	Arabidopsis thaliana At2g10880 mRNA, partial sequence	NA	coding protein	psRNATarget
EF183192.1	ncRNA:23   GGUGAGCUGGUUCUCCAGCUCAU   1   =|||||*|||||*|||||||||| targets:317   UCACUCUACCAACAGGUCGAGUA   339 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_2299 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183192.1	ncRNA:23   GGUGAGCUGGUUCUCCAGCUCAU   1   =|||||*|||||*|||||||||| targets:365   UCACUCUACCAACAGGUCGAGUA   387 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_2299 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183192.1	ncRNA:23   GGUGAGCUGGUUCUCCAGCUCAU   1   =|||||*|||||*|||||||||| targets:413   UCACUCUACCAACAGGUCGAGUA   435 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_2299 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183193.1	ncRNA:23   GGUGAGCUGGUUCUCCAGCUCAU   1   =|||||*|||||*|||||||||| targets:692   UCACUCUACCAACAGGUCGAGUA   714 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_2300 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183193.1	ncRNA:23   GGUGAGCUGGUUCUCCAGCUCAU   1   =|||||*|||||*|||||||||| targets:740   UCACUCUACCAACAGGUCGAGUA   762 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_2300 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183193.1	ncRNA:23   GGUGAGCUGGUUCUCCAGCUCAU   1   =|||||*|||||*|||||||||| targets:788   UCACUCUACCAACAGGUCGAGUA   810 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_2300 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183191.1	ncRNA:23   GGUGAGCUGGUUCUCCAGCUCAU   1   =|||||*|||||*|||||||||| targets:692   UCACUCUACCAACAGGUCGAGUA   714 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_2298 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183191.1	ncRNA:23   GGUGAGCUGGUUCUCCAGCUCAU   1   =|||||*|||||*|||||||||| targets:740   UCACUCUACCAACAGGUCGAGUA   762 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_2298 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183191.1	ncRNA:23   GGUGAGCUGGUUCUCCAGCUCAU   1   =|||||*|||||*|||||||||| targets:788   UCACUCUACCAACAGGUCGAGUA   810 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_2298 unknown mRNA sequence	NA	coding protein	psRNATarget
AY065245.1	ncRNA:23   GGUGAGCUGGUUCUCCAGCUCAU   1   ||-|||||||||||||||*|||* targets:507   CC-CUCGACCAAGAGGUCUAGUU   528 Target Full Sequence	2.5	Arabidopsis thaliana At5g10630 mRNA sequence	NA	coding protein	psRNATarget
NM_203034.2	ncRNA:23   GGUGAGCUGGUUCUCCAGCUCAU   1   ||-|||||||||||||||*|||* targets:507   CC-CUCGACCAAGAGGUCUAGUU   528 Target Full Sequence	2.5	Arabidopsis thaliana flowering-promoting factor-like protein mRNA	flowering-promoting factor-like protein(AT5G10625)	coding protein	psRNATarget