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BaseInfo

ncRNA ID novel_bna_miR5
Species Brassica napus
Class miRNA
Genome position ChrC9:1630972-1631080 [+]
Reference genome Brassica_napus_assembly_v1.0
Source SRR527229;SRR2015555;SRR527228
Length 21
Mature sequence(if miRNA) 1 - UGAGCCAAGGAUGACUUGCCG - 21
Stem-loop(if miRNA) --U         A           UU    UU    C    ---C   A      UU
   GAGCCAAGG UGACUUGCCGG  UAUA  CAAA GGUU    AUG UGACCA  G
   ||||||||| |||||||||||  ||||  |||| ||||    ||| ||||||
   CUCGGUUCC GUUGAACGGUC  GUGU  GUUU CCGA    UAC ACUGGU  U
UGU         A           -U    UG    C    CUCA   -      UU
Stem-loop sequence UGAGCCAAGGAUGACUUGCCGGUUUAUAUUCAAACGGUUCAUGAUGACCAUUGUUUUGGUCACAUACUCAGCCCUUUGGUUGUGUCUGGCAAGUUGACCUUGGCUCUGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_013880479.1
ncRNA:21   GCCGUUCAGUAGGAACCGAGU   1
  =|||||*|||||=||||||||
targets:1170   UGGCAACUCAUCUUUGGCUCA   1190

2.5 PREDICTED: Brassica napus nuclear transcription factor Y subunit A-2-like (LOC106439112), mRNA nuclear transcription factor Y subunit A-2-like(LOC106439112) coding protein psRNATarget
XM_013829031.1
ncRNA:21   GCCGUUCAGUAGGAACCGAGU   1
  =|||||*|||||=||||||||
targets:1164   UGGCAACUCAUCUUUGGCUCA   1184

2.5 PREDICTED: Brassica napus nuclear transcription factor Y subunit A-2-like (LOC106388859), mRNA nuclear transcription factor Y subunit A-2-like(LOC106388859) coding protein psRNATarget
XM_013825513.1
ncRNA:21   GCCGUUCAGUAGGAACCGAGU   1
  *|||||*|||||=||||||||
targets:1070   AGGCAACUCAUCUUUGGCUCA   1090

2.5 PREDICTED: Brassica napus nuclear transcription factor Y subunit A-10-like (LOC106385600), transcript variant X2, mRNA nuclear transcription factor Y subunit A-10-like(LOC106385600) coding protein psRNATarget
XM_013825512.1
ncRNA:21   GCCGUUCAGUAGGAACCGAGU   1
  *|||||*|||||=||||||||
targets:1073   AGGCAACUCAUCUUUGGCUCA   1093

2.5 PREDICTED: Brassica napus nuclear transcription factor Y subunit A-10-like (LOC106385600), transcript variant X1, mRNA nuclear transcription factor Y subunit A-10-like(LOC106385600) coding protein psRNATarget
XM_013814333.1
ncRNA:21   GCCGUUCAGUAGGAACCGAGU   1
  *|||||*|||||=||||||||
targets:1037   AGGCAACUCAUCUUUGGCUCA   1057

2.5 PREDICTED: Brassica napus nuclear transcription factor Y subunit A-10-like (LOC106374257), transcript variant X4, mRNA nuclear transcription factor Y subunit A-10-like(LOC106374257) coding protein psRNATarget
XM_013814332.1
ncRNA:21   GCCGUUCAGUAGGAACCGAGU   1
  *|||||*|||||=||||||||
targets:1048   AGGCAACUCAUCUUUGGCUCA   1068

2.5 PREDICTED: Brassica napus nuclear transcription factor Y subunit A-10-like (LOC106374257), transcript variant X3, mRNA nuclear transcription factor Y subunit A-10-like(LOC106374257) coding protein psRNATarget
XM_013814331.1
ncRNA:21   GCCGUUCAGUAGGAACCGAGU   1
  *|||||*|||||=||||||||
targets:1071   AGGCAACUCAUCUUUGGCUCA   1091

2.5 PREDICTED: Brassica napus nuclear transcription factor Y subunit A-10-like (LOC106374257), transcript variant X2, mRNA nuclear transcription factor Y subunit A-10-like(LOC106374257) coding protein psRNATarget
XM_013860052.1
ncRNA:21   GCCGUUCAGUAGGAACCGAGU   1
  *|||||*|||||=||||||||
targets:1063   AGGCAACUCAUCUUUGGCUCA   1083

2.5 PREDICTED: Brassica napus nuclear transcription factor Y subunit A-10-like (LOC106419291), transcript variant X4, mRNA nuclear transcription factor Y subunit A-10-like(LOC106419291) coding protein psRNATarget
XM_013860051.1
ncRNA:21   GCCGUUCAGUAGGAACCGAGU   1
  *|||||*|||||=||||||||
targets:1066   AGGCAACUCAUCUUUGGCUCA   1086

2.5 PREDICTED: Brassica napus nuclear transcription factor Y subunit A-10-like (LOC106419291), transcript variant X3, mRNA nuclear transcription factor Y subunit A-10-like(LOC106419291) coding protein psRNATarget
XM_013860050.1
ncRNA:21   GCCGUUCAGUAGGAACCGAGU   1
  *|||||*|||||=||||||||
targets:1069   AGGCAACUCAUCUUUGGCUCA   1089

2.5 PREDICTED: Brassica napus nuclear transcription factor Y subunit A-10-like (LOC106419291), transcript variant X2, mRNA nuclear transcription factor Y subunit A-10-like(LOC106419291) coding protein psRNATarget
XM_013814334.1
ncRNA:21   GCCGUUCAGUAGGAACCGAGU   1
  *|||||*|||||=||||||||
targets:1223   AGGCAACUCAUCUUUGGCUCA   1243

2.5 PREDICTED: Brassica napus nuclear transcription factor Y subunit A-10-like (LOC106374257), transcript variant X5, mRNA nuclear transcription factor Y subunit A-10-like(LOC106374257) coding protein psRNATarget
XM_013860049.1
ncRNA:21   GCCGUUCAGUAGGAACCGAGU   1
  *|||||*|||||=||||||||
targets:1072   AGGCAACUCAUCUUUGGCUCA   1092

2.5 PREDICTED: Brassica napus nuclear transcription factor Y subunit A-10-like (LOC106419291), transcript variant X1, mRNA nuclear transcription factor Y subunit A-10-like(LOC106419291) coding protein psRNATarget
XM_013814330.1
ncRNA:21   GCCGUUCAGUAGGAACCGAGU   1
  *|||||*|||||=||||||||
targets:1226   AGGCAACUCAUCUUUGGCUCA   1246

2.5 PREDICTED: Brassica napus nuclear transcription factor Y subunit A-10-like (LOC106374257), transcript variant X1, mRNA nuclear transcription factor Y subunit A-10-like(LOC106374257) coding protein psRNATarget
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