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BaseInfo

ncRNA ID novel_bna_miR4
Species Brassica napus
Class miRNA
Genome position ChrC9:14812866-14812964 [+]
Reference genome Brassica_napus_assembly_v1.0
Source SRR527229
Length 21
Mature sequence(if miRNA) 79 - AAGAGUAACACGACUCCAACA - 99
Stem-loop(if miRNA) --   C    U          U           GUA    AU   AAUU
  UUG AGUC UGUUACUCUU AUUAAUCAUGG   UGUU  CAU    U
  ||| |||| |||||||||| |||||||||||   ||||  |||    U
  AAC UCAG ACAAUGAGAA UAAUUAGUACC   ACAA  GUA    U
AC   C    C          C           AAC    AU   AAUU
Stem-loop sequence UUGCAGUCUUGUUACUCUUUAUUAAUCAUGGGUAUGUUAUCAUAAUUUUUUUAAAUGUAAACACAACCAUGAUUAAUCAAGAGUAACACGACUCCAACA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_013823476.1
ncRNA:21   ACAACCUCAGCACAAUGAGAA   1
  ****||||||||||||||||*
targets:621   ACCGGGAGUCGUGUUACUCUC   641

3.0 PREDICTED: Brassica napus agmatine deiminase-like (LOC106383361), partial mRNA agmatine deiminase-like(LOC106383361) coding protein psRNATarget
XM_013824911.1
ncRNA:21   ACAACCUCAGCACAAUGAGAA   1
  ****||||||||||||||||*
targets:756   ACCGGGAGUCGUGUUACUCUC   776

3.0 PREDICTED: Brassica napus agmatine deiminase-like (LOC106384982), mRNA agmatine deiminase-like(LOC106384982) coding protein psRNATarget