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BaseInfo

ncRNA ID novel_bna_miR2
Species Brassica napus
Class miRNA
Genome position ChrC6:23117346-23117398 [+]
Reference genome Brassica_napus_assembly_v1.0
Source SRR1363495
Length 24
Mature sequence(if miRNA) 30 - AGGUCUGGAGAAAUGAAGAUGCAA - 53
Stem-loop(if miRNA) --       -        AA   AA  A
  GCGUCUU GUUUCUCU  AGA  UA A
  ||||||| ||||||||  |||  ||
  CGUAGAA UAAAGAGG  UCU  AU A
AA       G        --   GG  G
Stem-loop sequence GCGUCUUGUUUCUCUAAAGAAAUAAAAGUAGGUCUGGAGAAAUGAAGAUGCAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_013787348.1
ncRNA:24   AAC-GUAGAAGUAAAGAGGUCUGGA   1
  |||-|*||||||||||||||*|||*
targets:40   UUGACUUCUUCAUUUCUCCAAACCC   64

2.5 PREDICTED: Brassica napus bifunctional L-3-cyanoalanine synthase/cysteine synthase-like (LOC106347750), transcript variant X2, mRNA bifunctional L-3-cyanoalanine synthase/cysteine synthase-like(LOC106347750) coding protein psRNATarget
XM_013867316.1
ncRNA:24   AAC-GUAGAAGUAAAGAGGUCUGGA   1
  |||-|*||||||||||||||*|||*
targets:39   UUGACUUCUUCAUUUCUCCAAACCC   63

2.5 PREDICTED: Brassica napus bifunctional L-3-cyanoalanine synthase/cysteine synthase-like (LOC106426599), transcript variant X2, mRNA bifunctional L-3-cyanoalanine synthase/cysteine synthase-like(LOC106426599) coding protein psRNATarget