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BaseInfo

ncRNA ID ath-miRf10544-npr
Species Arabidopsis thaliana
Class miRNA
Genome position NA
Reference genome NA
Source PNRD
Length 22
Mature sequence(if miRNA) NA - UGCUCGACCUGGGGGUCGAGUG - NA
Stem-loop(if miRNA)     AG          AGGU        GA     ----   ---          GG  A    GUAUGUAAUCGAGUGAUGGUGAUGGUGAUACUCGACUUCAUGGUAGAGUGGUGUGAUCGAGUGAAG
GAAC  UACUCGACCC    GGUCGAGU  GAGGU    CGA   GUGAUUAGCU  CA UCGA                                                                  U
||||  ||||||||||    ||||||||  |||||    |||   ||||||||||  || ||||
UUUG  GUGAGCUGGG    CCAGCUCG  CUACG    GCU   GUUUCCUGGU  AC UGGG                                                                  G
    --          -GGU        -U     AGGU   GUA          GA  -    GGACCAGCUCAUCUUCUGAAGUGGUGAGCUGAUGGACCGGCUCAUGGUGGUACUCUCAGUGAGCUA
Stem-loop sequence GAACAGUACUCGACCCAGGUGGUCGAGUGAGAGGUCGAGUGAUUAGCUGGCAAUCGAGUAUGUAAUCGAGUGAUGGUGAUGGUGAUACUCGACUUCAUGGUAGAGUGGUGUGAUCGAGUGAAGUGAUCGAGUGACUCUCAUGGUGGUACUCGGCCAGGUAGUCGAGUGGUGAAGUCUUCUACUCGACCAGGGGGUCAAGUGGUCCUUUGAUGUCGUGGAGCAUCUGCUCGACCUGGGGGUCGAGUGGUUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_103391.1
ncRNA:22   GUGAGCUGGGGGUCCAGCUCGU   1
  ||||||||||||||||||||=|
targets:1105   CACUCGACCCCCAGGUCGAGUA   1126

1.5 Arabidopsis thaliana DNAse I-like superfamily protein partial mRNA DNAse I-like superfamily protein(AT1G40390) coding protein psRNATarget
BT025674.1
ncRNA:22   GUGAGCUGGGGGUCCAGCUCGU   1
  =|||||||||||||||||||=|
targets:188   UACUCGACCCCCAGGUCGAGUA   209

1.5 Arabidopsis thaliana NA coding protein psRNATarget
BT015478.1
ncRNA:22   GUGAGCUGGGGGUCCAGCUCGU   1
  =|||||||||||||||||||==
targets:137   UACUCGACCCCCAGGUCGAGUG   158

2.5 Arabidopsis thaliana At4g05636 mRNA sequence NA coding protein psRNATarget
BT014714.1
ncRNA:22   GUGAGCUGGGGGUCCAGCUCGU   1
  =|||||||||||||||||||==
targets:137   UACUCGACCCCCAGGUCGAGUG   158

2.5 Arabidopsis thaliana At4g05636.1 mRNA sequence NA coding protein psRNATarget