ncRNA ID | ath-miRf10544-npr |
Species | Arabidopsis thaliana |
Class | miRNA |
Genome position | NA |
Reference genome | NA |
Source | PNRD |
Length | 22 |
Mature sequence(if miRNA) | NA - UGCUCGACCUGGGGGUCGAGUG - NA |
Stem-loop(if miRNA) |
    AG          AGGU        GA     ----   ---          GG  A    GUAUGUAAUCGAGUGAUGGUGAUGGUGAUACUCGACUUCAUGGUAGAGUGGUGUGAUCGAGUGAAG GAAC  UACUCGACCC    GGUCGAGU  GAGGU    CGA   GUGAUUAGCU  CA UCGA                                                                  U ||||  ||||||||||    ||||||||  |||||    |||   ||||||||||  || |||| UUUG  GUGAGCUGGG    CCAGCUCG  CUACG    GCU   GUUUCCUGGU  AC UGGG                                                                  G     --          -GGU        -U     AGGU   GUA          GA  -    GGACCAGCUCAUCUUCUGAAGUGGUGAGCUGAUGGACCGGCUCAUGGUGGUACUCUCAGUGAGCUA |
Stem-loop sequence | GAACAGUACUCGACCCAGGUGGUCGAGUGAGAGGUCGAGUGAUUAGCUGGCAAUCGAGUAUGUAAUCGAGUGAUGGUGAUGGUGAUACUCGACUUCAUGGUAGAGUGGUGUGAUCGAGUGAAGUGAUCGAGUGACUCUCAUGGUGGUACUCGGCCAGGUAGUCGAGUGGUGAAGUCUUCUACUCGACCAGGGGGUCAAGUGGUCCUUUGAUGUCGUGGAGCAUCUGCUCGACCUGGGGGUCGAGUGGUUU |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
NM_103391.1 |
|
1.5 | Arabidopsis thaliana DNAse I-like superfamily protein partial mRNA | DNAse I-like superfamily protein(AT1G40390) | coding protein | psRNATarget | |||||||||
BT025674.1 |
|
1.5 | Arabidopsis thaliana | NA | coding protein | psRNATarget | |||||||||
BT015478.1 |
|
2.5 | Arabidopsis thaliana At4g05636 mRNA sequence | NA | coding protein | psRNATarget | |||||||||
BT014714.1 |
|
2.5 | Arabidopsis thaliana At4g05636.1 mRNA sequence | NA | coding protein | psRNATarget |