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BaseInfo

ncRNA ID	novel_ath_miR1048
Species	Arabidopsis thaliana
Class	miRNA
Genome position	Chr5:8524331-8524412 [+]
Reference genome	TAIR10
Source	SRR1266867
Length	21
Mature sequence(if miRNA)	62 - CUUAAAAAGGAAAAUGUCUUU - 82
Stem-loop(if miRNA)	--                 GA    A   A A    CUCUA   AGACAUUUUCCUUUUUG  UGUC AAA U UCUU     A   |||||||||||||||||  |||| ||| | ||||   UCUGUAAAAGGAAAAAU  ACAG UUU A AGAA     G UU                 UC    A   A C    UUACA
Stem-loop sequence	AGACAUUUUCCUUUUUGGAUGUCAAAAAUAUCUUCUCUAAGACAUUAAGACAAUUUAGACACUUAAAAAGGAAAAUGUCUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_106122.3	ncRNA:21   UUUCUGUAAAAGGAAAAAUUC   1   |||*|=||||||||||||||* targets:1530   AAACAUAUUUUCCUUUUUAAU   1550 Target Full Sequence	3.0	Arabidopsis thaliana alpha/beta-Hydrolases superfamily protein mRNA	alpha/beta-Hydrolases superfamily protein(AT1G74640)	coding protein	psRNATarget
NM_001344532.1	ncRNA:21   UUUCUGUAAAAGGAAAAAUUC   1   |||*||*|||||||||||||* targets:112   AAAUACUUUUUCCUUUUUAAU   132 Target Full Sequence	3.0	Arabidopsis thaliana Calcium-binding EF-hand family protein mRNA	Calcium-binding EF-hand family protein(AT5G44090)	coding protein	psRNATarget
NM_123776.4	ncRNA:21   UUUCUGUAAAAGGAAAAAUUC   1   |||*||*|||||||||||||* targets:113   AAAUACUUUUUCCUUUUUAAU   133 Target Full Sequence	3.0	Arabidopsis thaliana Calcium-binding EF-hand family protein mRNA	Calcium-binding EF-hand family protein(AT5G44090)	coding protein	psRNATarget
BX815895.1	ncRNA:21   UUUCUGUAAAAGGAAAAAUUC   1   ****=|||||||||||||||| targets:1120   UCCUGCAUUUUCCUUUUUAAG   1140 Target Full Sequence	3.0	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH15ZD09 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget