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BaseInfo

ncRNA ID novel_ath_miR1046
Species Arabidopsis thaliana
Class miRNA
Genome position Chr1:17824946-17825026 [-]
Reference genome TAIR10
Source SRR1266865
Length 23
Mature sequence(if miRNA) 1 - AAGUAGUACUCAAACCCGAGAUA - 23
Stem-loop(if miRNA) --         UUA        -     G  -----    UG  U
  UUUCGGGUU   UGGGUACU UUUAU UA     UGUU  GG A
  |||||||||   |||||||| ||||| ||     ||||  ||
  AGAGCCCAA   ACUCAUGA GAAUG GU     ACAG  UU U
AU         ---        U     G  UUGAA    GU  A
Stem-loop sequence UUUCGGGUUUUAUGGGUACUUUUAUGUAUGUUUGGGUAUAUUUGGACAAAGUUUGGGUAAGUAGUACUCAAACCCGAGAUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_112303.4
ncRNA:23   AUAGAGCCCAAACUCAUGAUGAA   1
  *=|=||*|*|||||||||||||*
targets:452   GGUUUCUGAUUUGAGUACUACUC   474

3.0 Arabidopsis thaliana GRIP/coiled-coil protein mRNA GRIP/coiled-coil protein(AT3G14430) coding protein psRNATarget
AK228144.1
ncRNA:23   AUAGAGCCCAAACUCAUGAUGAA   1
  *=|=||*|*|||||||||||||*
targets:370   GGUUUCUGAUUUGAGUACUACUC   392

3.0 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL14-61-E11 NA coding protein psRNATarget
AY087008.1
ncRNA:23   AUAGAGCCCAAACUCAUGAUGAA   1
  *=|=||*|*|||||||||||||*
targets:376   GGUUUCUGAUUUGAGUACUACUC   398

3.0 Arabidopsis thaliana clone 30464 mRNA, complete sequence NA coding protein psRNATarget