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BaseInfo

ncRNA ID novel_ath_miR1042
Species Arabidopsis thaliana
Class miRNA
Genome position Chr5:9322046-9322249 [+]
Reference genome TAIR10
Source SRR1266864
Length 22
Mature sequence(if miRNA) 183 - CUUGUAAAUCUCUUAAAACCCU - 204
Stem-loop(if miRNA) --        A          AG     GUAAACAU        G     A   -U                              -CC        UUACUU
  GGUUUUAA AGAUUUAUAA  GAUUU        UUUUAAAG GUUUA AAG  GUUUUGAAAGAUUUACAAGGGAUUUUAAAA   UUUUAAAA      G
  |||||||| ||||||||||  |||||        |||||||| ||||| |||  ||||||||||||||||||||||||||||||   ||||||||
  CCAAAAUU UCUAAAUGUU  UUAAA        AAAAUUUU UAAAU UUC  UAAAAUUUUCUAAAUGUUCCCUAAAAUUUU   AAAAUUUU      U
UC        C          CU     AUUUUUUC        G     G   UC                              CCC        UUAAAA
Stem-loop sequence GGUUUUAAAAGAUUUAUAAAGGAUUUGUAAACAUUUUUAAAGGGUUUAAAAGUGUUUUGAAAGAUUUACAAGGGAUUUUAAAACCUUUUAAAAUUACUUGUAAAAUUUUUUAAAACCCUUUUAAAAUCCCUUGUAAAUCUUUUAAAAUCUCUUGUAAAUGUUUUAAAACUUUUUUAAAAUUUCUUGUAAAUCUCUUAAAACCCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_114323.4
ncRNA:22   UCCCAAAAUUCUCUAAAUGUUC   1
  ||||||||||*|||||||||||
targets:2500   AGGGUUUUAAAAGAUUUACAAG   2521

1.5 Arabidopsis thaliana fatty acid reductase 5 (FAR5), mRNA fatty acid reductase 5(FAR5) coding protein psRNATarget
NM_001125646.1
ncRNA:22   UCCCAAAAUUCUCUAAAUGUUC   1
  **|*|||||||||*||||||||
targets:64   UUGUUUUUAAGAGUUUUACAAG   85

2.5 Arabidopsis thaliana hypothetical protein partial mRNA hypothetical protein(AT4G35025) coding protein psRNATarget