ncRNA ID | novel_ath_miR1042 |
Species | Arabidopsis thaliana |
Class | miRNA |
Genome position | Chr5:9322046-9322249 [+] |
Reference genome | TAIR10 |
Source | SRR1266864 |
Length | 22 |
Mature sequence(if miRNA) | 183 - CUUGUAAAUCUCUUAAAACCCU - 204 |
Stem-loop(if miRNA) |
--        A          AG     GUAAACAU        G     A   -U                              -CC        UUACUU   GGUUUUAA AGAUUUAUAA  GAUUU        UUUUAAAG GUUUA AAG  GUUUUGAAAGAUUUACAAGGGAUUUUAAAA   UUUUAAAA      G   |||||||| ||||||||||  |||||        |||||||| ||||| |||  ||||||||||||||||||||||||||||||   ||||||||   CCAAAAUU UCUAAAUGUU  UUAAA        AAAAUUUU UAAAU UUC  UAAAAUUUUCUAAAUGUUCCCUAAAAUUUU   AAAAUUUU      U UC        C          CU     AUUUUUUC        G     G   UC                              CCC        UUAAAA |
Stem-loop sequence | GGUUUUAAAAGAUUUAUAAAGGAUUUGUAAACAUUUUUAAAGGGUUUAAAAGUGUUUUGAAAGAUUUACAAGGGAUUUUAAAACCUUUUAAAAUUACUUGUAAAAUUUUUUAAAACCCUUUUAAAAUCCCUUGUAAAUCUUUUAAAAUCUCUUGUAAAUGUUUUAAAACUUUUUUAAAAUUUCUUGUAAAUCUCUUAAAACCCU |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
NM_114323.4 |
|
1.5 | Arabidopsis thaliana fatty acid reductase 5 (FAR5), mRNA | fatty acid reductase 5(FAR5) | coding protein | psRNATarget | |||||||||
NM_001125646.1 |
|
2.5 | Arabidopsis thaliana hypothetical protein partial mRNA | hypothetical protein(AT4G35025) | coding protein | psRNATarget |