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BaseInfo

ncRNA ID	novel_ath_miR1041
Species	Arabidopsis thaliana
Class	miRNA
Genome position	Chr5:13180816-13180893 [+]
Reference genome	TAIR10
Source	SRR1266864
Length	24
Mature sequence(if miRNA)	1 - GAGAGUGGUCGUCAAUACGCCGGC - 24
Stem-loop(if miRNA)	--                 CG      AC     -    U   GAGAGUGGUCGUCAAUA  CCGGCC  GGGUU GGGA U   |||||||||||||||||  ||||||  ||||| |||| A   CUCUUACUAGUAGUUGU  GGUUGG  UCCAA CCCU G AA                 -A      -C     G    U
Stem-loop sequence	GAGAGUGGUCGUCAAUACGCCGGCCACGGGUUGGGAUUAGUUCCCGAACCUCGGUUGGAUGUUGAUGAUCAUUCUCAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_148436.4	ncRNA:24   CGGCCGCAUAACUGCUGGUGAGAG   1   ****|=|||||||||||=|||||| targets:1197   CAACGUGUAUUGACGACUACUCUC   1220 Target Full Sequence	2.5	Arabidopsis thaliana UPSTREAM OF FLC protein (DUF966) mRNA	UPSTREAM OF FLC protein (DUF966)(AT1G05577)	coding protein	psRNATarget
AY800564.1	ncRNA:24   CGGCCGCAUAACUGCUGGUGAGAG   1   ****|=|||||||||||=|||||| targets:1197   CAACGUGUAUUGACGACUACUCUC   1220 Target Full Sequence	2.5	Arabidopsis thaliana clone H0000001089 hypothetical protein (AT1G05577) mRNA, complete cds	NA	coding protein	psRNATarget
AY924654.1	ncRNA:24   CGGCCGCAUAACUGCUGGUGAGAG   1   ****|=|||||||||||=|||||| targets:1087   CAACGUGUAUUGACGACUACUCUC   1110 Target Full Sequence	2.5	Arabidopsis thaliana hypothetical protein (At1g05577) mRNA, complete cds	NA	coding protein	psRNATarget