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BaseInfo

ncRNA ID	novel_ath_miR1031
Species	Arabidopsis thaliana
Class	miRNA
Genome position	Chr2:16340283-16340363 [+]
Reference genome	TAIR10
Source	SRR1266862
Length	21
Mature sequence(if miRNA)	1 - UGCCUGGCUCCCUGUAUGCCA - 21
Stem-loop(if miRNA)	--   C       CU         A   U   CC     A   UGC UGGCUCC  GUAUGCCAU UGC GAG  CAUCG G   ||| |||||||  ||||||||| ||| |||  ||||| U   ACG ACCGAGG  UAUGCGGUA GUG CUC  GUAGC A AU   U       AG         G   C   CA     U
Stem-loop sequence	UGCCUGGCUCCCUGUAUGCCAUAUGCUGAGCCCAUCGAGUAUCGAUGACCUCCGUGGAUGGCGUAUGAGGAGCCAUGCAUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT002749.1	ncRNA:21   ACCGUAUGUCCCUCGGUCCGU   1   ||||||=|||||||||||||| targets:1317   UGGCAUGCAGGGAGCCAGGCA   1337 Target Full Sequence	1.0	Arabidopsis thaliana clone C104833 auxin response factor ARF17 (At1g77850) mRNA, complete cds	NA	coding protein	psRNATarget
BX814425.1	ncRNA:21   ACCGUAUGUCCCUCGGUCCGU   1   ||||||=|||||||||||||| targets:1326   UGGCAUGCAGGGAGCCAGGCA   1346 Target Full Sequence	1.0	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB73ZC01 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
AY056184.1	ncRNA:21   ACCGUAUGUCCCUCGGUCCGU   1   ||||||=|||||||||||||| targets:1409   UGGCAUGCAGGGAGCCAGGCA   1429 Target Full Sequence	1.0	Arabidopsis thaliana auxin response factor ARF17 (At1g77850) mRNA, complete cds	NA	coding protein	psRNATarget
NM_106434.2	ncRNA:21   ACCGUAUGUCCCUCGGUCCGU   1   ||||||=|||||||||||||| targets:1648   UGGCAUGCAGGGAGCCAGGCA   1668 Target Full Sequence	1.0	Arabidopsis thaliana auxin response factor 17 (ARF17), mRNA	auxin response factor 17(ARF17)	coding protein	psRNATarget
NM_001334800.1	ncRNA:21   ACCGUAUGUCCCUCGGUCCGU   1   ||||||=|||||||||||||| targets:1517   UGGCAUGCAGGGAGCCAGGCA   1537 Target Full Sequence	1.0	Arabidopsis thaliana auxin response factor 17 (ARF17), mRNA	auxin response factor 17(ARF17)	coding protein	psRNATarget
AB493569.1	ncRNA:21   ACCGUAUGUCCCUCGGUCCGU   1   *||*||||||||||||||||| targets:1329   AGGAAUACAGGGAGCCAGGCA   1349 Target Full Sequence	1.0	Arabidopsis thaliana At2g28350 mRNA for hypothetical protein, partial cds, clone: RAAt2g28350	NA	coding protein	psRNATarget
AF336919.1	ncRNA:21   ACCGUAUGUCCCUCGGUCCGU   1   *||*||||||||||||||||| targets:1329   AGGAAUACAGGGAGCCAGGCA   1349 Target Full Sequence	1.0	Arabidopsis thaliana clone C00034 (b) auxin response factor 10 (At2g28350) mRNA, complete cds	NA	coding protein	psRNATarget
AF325073.1	ncRNA:21   ACCGUAUGUCCCUCGGUCCGU   1   *||*||||||||||||||||| targets:1329   AGGAAUACAGGGAGCCAGGCA   1349 Target Full Sequence	1.0	Arabidopsis thaliana unknown protein (At2g28350) mRNA, complete cds	NA	coding protein	psRNATarget
AF099735.1	ncRNA:21   ACCGUAUGUCCCUCGGUCCGU   1   *||*||||||||||||||||| targets:1332   AGGAAUACAGGGAGCCAGGCA   1352 Target Full Sequence	1.0	Arabidopsis thaliana auxin response factor 10 (ARF10) mRNA, partial cds	NA	coding protein	psRNATarget
NM_001336164.1	ncRNA:21   ACCGUAUGUCCCUCGGUCCGU   1   *||*||||||||||||||||| targets:1598   AGGAAUACAGGGAGCCAGGCA   1618 Target Full Sequence	1.0	Arabidopsis thaliana auxin response factor 10 (ARF10), mRNA	auxin response factor 10(ARF10)	coding protein	psRNATarget
NM_128394.5	ncRNA:21   ACCGUAUGUCCCUCGGUCCGU   1   *||*||||||||||||||||| targets:1771   AGGAAUACAGGGAGCCAGGCA   1791 Target Full Sequence	1.0	Arabidopsis thaliana auxin response factor 10 (ARF10), mRNA	auxin response factor 10(ARF10)	coding protein	psRNATarget
AY091198.1	ncRNA:21   ACCGUAUGUCCCUCGGUCCGU   1   *||=*|||||||||||||||| targets:1329   GGGUUUACAGGGAGCCAGGCA   1349 Target Full Sequence	2.0	Arabidopsis thaliana putative transcription factor (At4g30080) mRNA, complete cds	NA	coding protein	psRNATarget
BX828241.1	ncRNA:21   ACCGUAUGUCCCUCGGUCCGU   1   *||=*|||||||||||||||| targets:1452   GGGUUUACAGGGAGCCAGGCA   1472 Target Full Sequence	2.0	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH66ZF04 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
AY059792.1	ncRNA:21   ACCGUAUGUCCCUCGGUCCGU   1   *||=*|||||||||||||||| targets:1481   GGGUUUACAGGGAGCCAGGCA   1501 Target Full Sequence	2.0	Arabidopsis thaliana putative transcription factor (At4g30080) mRNA, complete cds	NA	coding protein	psRNATarget
NM_119154.5	ncRNA:21   ACCGUAUGUCCCUCGGUCCGU   1   *||=*|||||||||||||||| targets:1526   GGGUUUACAGGGAGCCAGGCA   1546 Target Full Sequence	2.0	Arabidopsis thaliana auxin response factor 16 (ARF16), mRNA	auxin response factor 16(ARF16)	coding protein	psRNATarget