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BaseInfo

ncRNA ID	novel_ath_miR1030
Species	Arabidopsis thaliana
Class	miRNA
Genome position	Chr1:10227086-10227186 [+]
Reference genome	TAIR10
Source	SRR1266862
Length	21
Mature sequence(if miRNA)	81 - UGCCAAAGGAGAUUUGCCCUG - 101
Stem-loop(if miRNA)	--     A       A        A   -     C     -U UU     CU   GGGUA GAUCUCU UUGGCAGG AAC CAUUA UUAGA  C  UGCAU  C   ||||| ||||||| |||||||| ||| ||||| |||||  |  |||||   CCCGU UUAGAGG AACCGUCU UUG GUGAU AAUUU  G  ACGUA  U GU     -       A        A   A     U     UC UU     UU
Stem-loop sequence	GGGUAAGAUCUCUAUUGGCAGGAAACCAUUACUUAGAUCUUUGCAUCUCUUUAUGCAUUGCUUUUAAUUAGUGAGUUAUCUGCCAAAGGAGAUUUGCCCUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AY074292.1	ncRNA:21   GUCCCGUUUAGAGGAAACCGU   1   =*||||||||||||||||||| targets:829   UUGGGCAAAUCUCCUUUGGCA   849 Target Full Sequence	0.0	Arabidopsis thaliana putative E2, ubiquitin-conjugating enzyme (At2g33770) mRNA, complete cds	NA	coding protein	psRNATarget
NM_179887.3	ncRNA:21   GUCCCGUUUAGAGGAAACCGU   1   =*||||||||||||||||||| targets:902   UUGGGCAAAUCUCCUUUGGCA   922 Target Full Sequence	0.0	Arabidopsis thaliana phosphate 2 (PHO2), mRNA	phosphate 2(PHO2)	coding protein	psRNATarget
AY074292.1	ncRNA:21   GUCCCGUUUAGAGGAAACCGU   1   =||||||*||||||||||||| targets:740   UAGGGCAUAUCUCCUUUGGCA   760 Target Full Sequence	1.0	Arabidopsis thaliana putative E2, ubiquitin-conjugating enzyme (At2g33770) mRNA, complete cds	NA	coding protein	psRNATarget
AY074292.1	ncRNA:21   GUCCCGUUUAGAGGAAACCGU   1   =||*||||||||||||||||| targets:943   UAGAGCAAAUCUCCUUUGGCA   963 Target Full Sequence	1.0	Arabidopsis thaliana putative E2, ubiquitin-conjugating enzyme (At2g33770) mRNA, complete cds	NA	coding protein	psRNATarget
AY074292.1	ncRNA:21   GUCCCGUUUAGAGGAAACCGU   1   =*|*||||||||||||||||| targets:886   UCGAGCAAAUCUCCUUUGGCA   906 Target Full Sequence	1.0	Arabidopsis thaliana putative E2, ubiquitin-conjugating enzyme (At2g33770) mRNA, complete cds	NA	coding protein	psRNATarget
NM_179887.3	ncRNA:21   GUCCCGUUUAGAGGAAACCGU   1   =||||||*||||||||||||| targets:813   UAGGGCAUAUCUCCUUUGGCA   833 Target Full Sequence	1.0	Arabidopsis thaliana phosphate 2 (PHO2), mRNA	phosphate 2(PHO2)	coding protein	psRNATarget
NM_179887.3	ncRNA:21   GUCCCGUUUAGAGGAAACCGU   1   =||*||||||||||||||||| targets:1016   UAGAGCAAAUCUCCUUUGGCA   1036 Target Full Sequence	1.0	Arabidopsis thaliana phosphate 2 (PHO2), mRNA	phosphate 2(PHO2)	coding protein	psRNATarget
NM_179887.3	ncRNA:21   GUCCCGUUUAGAGGAAACCGU   1   =*|*||||||||||||||||| targets:959   UCGAGCAAAUCUCCUUUGGCA   979 Target Full Sequence	1.0	Arabidopsis thaliana phosphate 2 (PHO2), mRNA	phosphate 2(PHO2)	coding protein	psRNATarget
AY074292.1	ncRNA:21   GUCCCGUUUAGAGGAAACCGU   1   =|||||||||||=|||||||| targets:607   UAGGGCAAAUCUUCUUUGGCA   627 Target Full Sequence	1.5	Arabidopsis thaliana putative E2, ubiquitin-conjugating enzyme (At2g33770) mRNA, complete cds	NA	coding protein	psRNATarget
NM_179887.3	ncRNA:21   GUCCCGUUUAGAGGAAACCGU   1   =|||||||||||=|||||||| targets:680   UAGGGCAAAUCUUCUUUGGCA   700 Target Full Sequence	1.5	Arabidopsis thaliana phosphate 2 (PHO2), mRNA	phosphate 2(PHO2)	coding protein	psRNATarget
NM_001338199.1	ncRNA:21   GUCCCGUUUAGAGGAAACCGU   1   ||||*|**||||||||||||| targets:870   CAGGACUCAUCUCCUUUGGCA   890 Target Full Sequence	3.0	Arabidopsis thaliana F-box associated ubiquitination effector protein mRNA	F-box associated ubiquitination effector protein(AT3G16020)	coding protein	psRNATarget
NM_001338198.1	ncRNA:21   GUCCCGUUUAGAGGAAACCGU   1   ||||*|**||||||||||||| targets:870   CAGGACUCAUCUCCUUUGGCA   890 Target Full Sequence	3.0	Arabidopsis thaliana F-box associated ubiquitination effector protein mRNA	F-box associated ubiquitination effector protein(AT3G16020)	coding protein	psRNATarget