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BaseInfo

ncRNA ID novel_ath_miR1027
Species Arabidopsis thaliana
Class miRNA
Genome position Chr1:24605412-24605574 [+]
Reference genome TAIR10
Source ERR1297319
Length 24
Mature sequence(if miRNA) 140 - AACAGUGAAAAGUGACUACUUUGC - 163
Stem-loop(if miRNA) --                                                        G      A     UAUAAAAA   A
  AAAGUAGUCACUUUUCACUGUUUGAUUUGUACACUUAGAUCUGUACAACAUUUUUA UGUACA AUGUA        UAC C
  |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||        ||| A
  UUUCAUCAGUGAAAAGUGACAAACUAAACAUGUGGAUCUAGACAUGUUGUGAAAAU ACAUGU UACAU        AUG A
CG                                                        A      C     ----UCAC   C
Stem-loop sequence AAAGUAGUCACUUUUCACUGUUUGAUUUGUACACUUAGAUCUGUACAACAUUUUUAGUGUACAAAUGUAUAUAAAAAUACACAACGUACACUUACAUCUGUACAAUAAAAGUGUUGUACAGAUCUAGGUGUACAAAUCAAACAGUGAAAAGUGACUACUUUGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_105281.3
ncRNA:24   CGUUUCAUCAGUGAAAAGUGACAA   1
  ||||||||||||||||||||||||
targets:957   GCAAAGUAGUCACUUUUCACUGUU   980

0.0 Arabidopsis thaliana Plant thionin mRNA Plant thionin(AT1G66100) coding protein psRNATarget