ncRNA ID | novel_ath_miR1027 |
Species | Arabidopsis thaliana |
Class | miRNA |
Genome position | Chr1:24605412-24605574 [+] |
Reference genome | TAIR10 |
Source | ERR1297319 |
Length | 24 |
Mature sequence(if miRNA) | 140 - AACAGUGAAAAGUGACUACUUUGC - 163 |
Stem-loop(if miRNA) |
--                                                        G      A     UAUAAAAA   A   AAAGUAGUCACUUUUCACUGUUUGAUUUGUACACUUAGAUCUGUACAACAUUUUUA UGUACA AUGUA        UAC C   |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||        ||| A   UUUCAUCAGUGAAAAGUGACAAACUAAACAUGUGGAUCUAGACAUGUUGUGAAAAU ACAUGU UACAU        AUG A CG                                                        A      C     ----UCAC   C |
Stem-loop sequence | AAAGUAGUCACUUUUCACUGUUUGAUUUGUACACUUAGAUCUGUACAACAUUUUUAGUGUACAAAUGUAUAUAAAAAUACACAACGUACACUUACAUCUGUACAAUAAAAGUGUUGUACAGAUCUAGGUGUACAAAUCAAACAGUGAAAAGUGACUACUUUGC |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
NM_105281.3 |
|
0.0 | Arabidopsis thaliana Plant thionin mRNA | Plant thionin(AT1G66100) | coding protein | psRNATarget |