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BaseInfo

ncRNA ID novel_ath_miR1025
Species Arabidopsis thaliana
Class miRNA
Genome position Chr2:4209383-4209514 [+]
Reference genome TAIR10
Source ERR1297318
Length 24
Mature sequence(if miRNA) 1 - GUGUGCAGAACCUUUGGAUCGAGU - 24
Stem-loop(if miRNA) --    G     C    --           GCA    CAAAGAUUA   CCUAUACCACAAAAACAAGC
  GUGU CAGAA CUUU  GGAUCGAGUUU   UGCA         GUA                    A
  |||| ||||| ||||  |||||||||||   ||||         |||                    G
  UAUA GUCUU GAAA  UCUAGUUCAAG   AUGU         GUU                    A
UC    -     U    AU           AAA    ----AAAUA   CAAUGAUUGAGUAUAAAAGC
Stem-loop sequence GUGUGCAGAACCUUUGGAUCGAGUUUGCAUGCACAAAGAUUAGUACCUAUACCACAAAAACAAGCAGACGAAAAUAUGAGUUAGUAACUUGAUAAAUGUAAAAGAACUUGAUCUUAAAAGUUUCUGAUAUCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK230036.1
ncRNA:24   UGAGCUAGGUUUCCAAGACGUGUG   1
  ||||||||||||||||||||||||
targets:1370   ACUCGAUCCAAAGGUUCUGCACAC   1393

0.0 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL22-60-F14 NA coding protein psRNATarget