Search result

BaseInfo

ncRNA ID novel_ath_miR1015
Species Arabidopsis thaliana
Class miRNA
Genome position Chr4:12352961-12353130 [+]
Reference genome TAIR10
Source SRR1266860
Length 21
Mature sequence(if miRNA) 150 - UUGGACUGAAGGGAGCUCCCU - 170
Stem-loop(if miRNA) --A          G      U   C   UC  G U           A -  U   AC        C  AA  C      GCCAAAA
   GAGCUUCCUU AGUCCA UCA AGG  GU A AUGAUUCAAUU G CU CCG  UCAUUCAU CA  UA CGAGUC       U
   |||||||||| |||||| ||| |||  || | ||||||||||| | || |||  |||||||| ||  || ||||||
   CUCGAGGGAA UCAGGU AGU UCU  UA U UACUAGGUUAA C GA GGC  AGUAAGUA GU  AU GCUCAG       U
UCC          G      U   U   CU  G -           A A  U   GU        A  AA  U      AUCAAAC
Stem-loop sequence AGAGCUUCCUUGAGUCCAUUCACAGGUCGUGAUAUGAUUCAAUUAGCUUCCGACUCAUUCAUCCAAAUACCGAGUCGCCAAAAUUCAAACUAGACUCGUUAAAUGAAUGAAUGAUGCGGUAGACAAAUUGGAUCAUUGAUUCUCUUUGAUUGGACUGAAGGGAGCUCCCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_128252.6
ncRNA:21   UCCCUCGAGGGAAGUCAGGUU   1
  **|||||||||||||*|||||
targets:826   UUGGAGCUCCCUUCAUUCCAA   846

1.5 Arabidopsis thaliana myb domain protein 104 (MYB104), partial mRNA myb domain protein 104(MYB104) coding protein psRNATarget