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BaseInfo

ncRNA ID	ath-miRf10535-npr
Species	Arabidopsis thaliana
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	20
Mature sequence(if miRNA)	NA - AGAGAGGUUAGGGUUGAUGC - NA
Stem-loop(if miRNA)	-AA     -A  ------------AA  UG -   A   GAAGAUUGUUAAAGGGUG GCUGCAGCGCAUCAACCCUAAUCUCUCUCAUGUGGGUU   UUGGU  AC              CU  U CCU UGG                  A ||||||||||||||||||||||||||||||||||||||   |||||  ||              ||  | ||| |||                  G CGACGUCGCGUAGUUGGGAUUGGAGAGAGUACACCCGG   GAUCG  UG              AA  C CGA ACU                  G                                       GAA     GG  GUACAUUUAAUAAC  -- G   -   GCAAAGAGUUUGGGUUCU
Stem-loop sequence	GCUGCAGCGCAUCAACCCUAAUCUCUCUCAUGUGGGUUAAUUGGUAACAACUUGUCCUAUGGGAAGAUUGUUAAAGGGUGAGGUCUUGGGUUUGAGAAACGUCAAGCGCAACAAUAAUUUACAUGGUGGGCUAGAAGGGCCCACAUGAGAGAGGUUAGGGUUGAUGCGCUGCAGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_123119.4	ncRNA:20   CGUAGUUGGGAUUGGAGAGA   1   *||||||||=|||||||||* targets:249   UCAUCAACCUUAACCUCUCA   268 Target Full Sequence	2.5	Arabidopsis thaliana hypothetical protein (GSR 1), mRNA	hypothetical protein(GSR 1)	coding protein	psRNATarget
BT000753.1	ncRNA:20   CGUAGUUGGGAUUGGAGAGA   1   *||||||||=|||||||||* targets:100   UCAUCAACCUUAACCUCUCA   119 Target Full Sequence	2.5	Arabidopsis thaliana putative glutamate-ammonia ligase (At5g37600) mRNA, complete cds	NA	coding protein	psRNATarget
AF419608.1	ncRNA:20   CGUAGUUGGGAUUGGAGAGA   1   *||||||||=|||||||||* targets:93   UCAUCAACCUUAACCUCUCA   112 Target Full Sequence	2.5	Arabidopsis thaliana AT5g37600/K12B20_50 mRNA, complete cds	NA	coding protein	psRNATarget
AF428386.1	ncRNA:20   CGUAGUUGGGAUUGGAGAGA   1   *||||||||=|||||||||* targets:93   UCAUCAACCUUAACCUCUCA   112 Target Full Sequence	2.5	Arabidopsis thaliana AT5g37600/K12B20_50 mRNA, complete cds	NA	coding protein	psRNATarget
AY079113.1	ncRNA:20   CGUAGUUGGGAUUGGAGAGA   1   *||||||||=|||||||||* targets:20   UCAUCAACCUUAACCUCUCA   39 Target Full Sequence	2.5	Arabidopsis thaliana AT5g37600/K12B20_50 mRNA, complete cds	NA	coding protein	psRNATarget
BT014729.1	ncRNA:20   CGUAGUUGGGAUUGGAGAGA   1   *||||||||=|||||||||* targets:17   UCAUCAACCUUAACCUCUCA   36 Target Full Sequence	2.5	Arabidopsis thaliana At5g37600.1 mRNA sequence	NA	coding protein	psRNATarget
BT015467.1	ncRNA:20   CGUAGUUGGGAUUGGAGAGA   1   *||||||||=|||||||||* targets:17   UCAUCAACCUUAACCUCUCA   36 Target Full Sequence	2.5	Arabidopsis thaliana At5g37600 mRNA sequence	NA	coding protein	psRNATarget
NM_001203157.1	ncRNA:20   CGUAGUUGGGAUUGGAGAGA   1   ||*|||||||||*||||||| targets:1322   GCUUCAACCCUAUCCUCUCU   1341 Target Full Sequence	2.5	Arabidopsis thaliana SAC3/GANP/Nin1/mts3/eIF-3 p25 family (SAC3C), mRNA	SAC3/GANP/Nin1/mts3/eIF-3 p25 family(SAC3C)	coding protein	psRNATarget
NM_001339664.1	ncRNA:20   CGUAGUUGGGAUUGGAGAGA   1   ||*|||||||||*||||||| targets:1228   GCUUCAACCCUAUCCUCUCU   1247 Target Full Sequence	2.5	Arabidopsis thaliana SAC3/GANP/Nin1/mts3/eIF-3 p25 family (SAC3C), mRNA	SAC3/GANP/Nin1/mts3/eIF-3 p25 family(SAC3C)	coding protein	psRNATarget
BX842408.1	ncRNA:20   CGUAGUUGGGAUUGGAGAGA   1   ||*|||||||||*||||||| targets:1134   GCUUCAACCCUAUCCUCUCU   1153 Target Full Sequence	2.5	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH71ZH11 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
NM_180685.3	ncRNA:20   CGUAGUUGGGAUUGGAGAGA   1   ||*|||||||||*||||||| targets:1067   GCUUCAACCCUAUCCUCUCU   1086 Target Full Sequence	2.5	Arabidopsis thaliana SAC3/GANP/Nin1/mts3/eIF-3 p25 family (SAC3C), mRNA	SAC3/GANP/Nin1/mts3/eIF-3 p25 family(SAC3C)	coding protein	psRNATarget
AF386980.1	ncRNA:20   CGUAGUUGGGAUUGGAGAGA   1   ||*|||||||||*||||||| targets:1047   GCUUCAACCCUAUCCUCUCU   1066 Target Full Sequence	2.5	Arabidopsis thaliana Unknown protein (T12E18.6:T12E18.7) mRNA, complete cds	NA	coding protein	psRNATarget
AY087832.1	ncRNA:20   CGUAGUUGGGAUUGGAGAGA   1   ||*|||||||||*||||||| targets:1036   GCUUCAACCCUAUCCUCUCU   1055 Target Full Sequence	2.5	Arabidopsis thaliana clone 38778 mRNA, complete sequence	NA	coding protein	psRNATarget
AK176716.1	ncRNA:20   CGUAGUUGGGAUUGGAGAGA   1   ||*|||||||||*||||||| targets:1059   GCUUCAACCCUAUCCUCUCU   1078 Target Full Sequence	2.5	Arabidopsis thaliana mRNA for putative protein, complete cds, clone: RAFL25-26-A10	NA	coding protein	psRNATarget
BX842401.1	ncRNA:20   CGUAGUUGGGAUUGGAGAGA   1   ||*|||||||||*||||||| targets:1027   GCUUCAACCCUAUCCUCUCU   1046 Target Full Sequence	2.5	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH94ZE07 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
BT008465.1	ncRNA:20   CGUAGUUGGGAUUGGAGAGA   1   ||*|||||||||*||||||| targets:1008   GCUUCAACCCUAUCCUCUCU   1027 Target Full Sequence	2.5	Arabidopsis thaliana At3g54370 gene, complete cds	NA	coding protein	psRNATarget