ncRNA ID | ath-miR5635b |
Species | Arabidopsis thaliana |
Class | miRNA |
Genome position | chr1:20622538-20622719 [-] |
Reference genome | TAIR10 |
Source | miRBase |
Length | 21 |
Mature sequence(if miRNA) | 25 - UGUUAAGGAGUGUUAACGGUG - 45 |
Stem-loop(if miRNA) |
          C       G                            U           -GUAA  AACAACUGUUUUCGUCCUUAAACC AUCGUUGACC GGUCAAA CGACUCAUUGUUAACACUUCUUAACAGC CUCCUAACAGC     CU                        A |||||||||| ||||||| |||||||||||||||||||||||||||| |||||||||||     ||                        A UAGCAACUGG CCGGUUU GCUGAGUGGCAAUUGUGAGGAAUUGUCG GAGGAUUGUCG     GU                        C           U       A                            C           GGAAU  UUUGUACCGGAUUGUCGGCAAUAG |
Stem-loop sequence | AUCGUUGACCCGGUCAAAGCGACUCAUUGUUAACACUUCUUAACAGCUCUCCUAACAGCGUAACUAACAACUGUUUUCGUCCUUAAACCAACGAUAACGGCUGUUAGGCCAUGUUUUGUAAGGGCUGUUAGGAGCGCUGUUAAGGAGUGUUAACGGUGAGUCGAUUUGGCCUGGUCAACGAU |
1 | PMID:21940835
"High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis"; Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN; Genome Res. 22:163-176(2012). |