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BaseInfo

ncRNA ID ath-miR5635b
Species Arabidopsis thaliana
Class miRNA
Genome position chr1:20622538-20622719 [-]
Reference genome TAIR10
Source miRBase
Length 21
Mature sequence(if miRNA) 25 - UGUUAAGGAGUGUUAACGGUG - 45
Stem-loop(if miRNA)           C       G                            U           -GUAA  AACAACUGUUUUCGUCCUUAAACC
AUCGUUGACC GGUCAAA CGACUCAUUGUUAACACUUCUUAACAGC CUCCUAACAGC     CU                        A
|||||||||| ||||||| |||||||||||||||||||||||||||| |||||||||||     ||                        A
UAGCAACUGG CCGGUUU GCUGAGUGGCAAUUGUGAGGAAUUGUCG GAGGAUUGUCG     GU                        C
          U       A                            C           GGAAU  UUUGUACCGGAUUGUCGGCAAUAG
Stem-loop sequence AUCGUUGACCCGGUCAAAGCGACUCAUUGUUAACACUUCUUAACAGCUCUCCUAACAGCGUAACUAACAACUGUUUUCGUCCUUAAACCAACGAUAACGGCUGUUAGGCCAUGUUUUGUAAGGGCUGUUAGGAGCGCUGUUAAGGAGUGUUAACGGUGAGUCGAUUUGGCCUGGUCAACGAU

Reference

1 PMID:21940835
"High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis";
Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN;
Genome Res. 22:163-176(2012).