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BaseInfo

ncRNA ID	novel_ath_miR989
Species	Arabidopsis thaliana
Class	miRNA
Genome position	Chr5:13180815-13180894 [+]
Reference genome	TAIR10
Source	SRR1266003
Length	25
Mature sequence(if miRNA)	1 - GGAGAGUGGUCGUCAAUACGCCGGC - 25
Stem-loop(if miRNA)	--G                 CG      AC     -    U    GAGAGUGGUCGUCAAUA  CCGGCC  GGGUU GGGA U    |||||||||||||||||  ||||||  ||||| |||| A    CUCUUACUAGUAGUUGU  GGUUGG  UCCAA CCCU G UAA                 -A      -C     G    U
Stem-loop sequence	GGAGAGUGGUCGUCAAUACGCCGGCCACGGGUUGGGAUUAGUUCCCGAACCUCGGUUGGAUGUUGAUGAUCAUUCUCAAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_148436.4	ncRNA:25   CGGCCGCAUAACUGCUGGUGAGAGG   1   ****|=|||||||||||=||||||* targets:1197   CAACGUGUAUUGACGACUACUCUCA   1221 Target Full Sequence	2.5	Arabidopsis thaliana UPSTREAM OF FLC protein (DUF966) mRNA	UPSTREAM OF FLC protein (DUF966)(AT1G05577)	coding protein	psRNATarget
AY800564.1	ncRNA:25   CGGCCGCAUAACUGCUGGUGAGAGG   1   ****|=|||||||||||=||||||* targets:1197   CAACGUGUAUUGACGACUACUCUCA   1221 Target Full Sequence	2.5	Arabidopsis thaliana clone H0000001089 hypothetical protein (AT1G05577) mRNA, complete cds	NA	coding protein	psRNATarget
AY924654.1	ncRNA:25   CGGCCGCAUAACUGCUGGUGAGAGG   1   ****|=|||||||||||=||||||* targets:1087   CAACGUGUAUUGACGACUACUCUCA   1111 Target Full Sequence	2.5	Arabidopsis thaliana hypothetical protein (At1g05577) mRNA, complete cds	NA	coding protein	psRNATarget