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BaseInfo

ncRNA ID novel_ath_miR975
Species Arabidopsis thaliana
Class miRNA
Genome position Chr5:15106411-15106636 [-]
Reference genome TAIR10
Source DRR014210
Length 24
Mature sequence(if miRNA) 203 - AAGGGUUUUAAAAGAUUUAUAAGA - 226
Stem-loop(if miRNA) -    -              A    AAAUUUUAAA    U       U    AC         ----------                   U             -    GG    CUU UA
 AAGG GUUUUAAAAGAUUU UAAG          AGGG UUUAAAA AUUU  AAGGGAUUU          UAAAAGAGUUUUAAAAGAU UACAAGAGUUUUU CAAG  UUUU   G  A
 |||| |||||||||||||| ||||          |||| ||||||| ||||  |||||||||          ||||||||||||||||||| ||||||||||||| ||||  ||||   |
 UUUC CAAAAUUUUCUAAA GUUC          UCCC AAAUUUU UAAA  UUCUCUAAA          AUUUUCUCAAAAUUUUCUA AUGUUCUCAAAAA GUUC  AAAA   C  A
U    A              C    ---------C    C       C    GA         AAUUUCUCAA                   U             U    UA    UUU UU
Stem-loop sequence AAGGGUUUUAAAAGAUUUAUAAGAAAUUUUAAAAGGGUUUUAAAAUAUUUACAAGGGAUUUUAAAAGAGUUUUAAAAGAUUUACAAGAGUUUUUCAAGGGUUUUCUUGUAAAUUCUUUAAAAAUCUUGUAAAAACUCUUGUAUAUCUUUUAAAACUCUUUUAAACUCUUUAAAAAUCUCUUAGAAAUCUUUUAAACCCCUCCUUGCAAAUCUUUUAAAACACUUUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_127328.3
ncRNA:24   AGA--------AUAUUUAGAAAAUUUUGGGAA   1
  |||--------|||||||*||||=||||||||
targets:50   UCUAUAUUCACUAUAAAUAUUUUGAAACCCUU   81

2.5 Arabidopsis thaliana Cysteine/Histidine-rich C1 domain family protein mRNA Cysteine/Histidine-rich C1 domain family protein(AT2G17740) coding protein psRNATarget