ncRNA ID | novel_ath_miR975 |
Species | Arabidopsis thaliana |
Class | miRNA |
Genome position | Chr5:15106411-15106636 [-] |
Reference genome | TAIR10 |
Source | DRR014210 |
Length | 24 |
Mature sequence(if miRNA) | 203 - AAGGGUUUUAAAAGAUUUAUAAGA - 226 |
Stem-loop(if miRNA) |
-    -              A    AAAUUUUAAA    U       U    AC         ----------                   U             -    GG    CUU UA  AAGG GUUUUAAAAGAUUU UAAG          AGGG UUUAAAA AUUU  AAGGGAUUU          UAAAAGAGUUUUAAAAGAU UACAAGAGUUUUU CAAG  UUUU   G  A  |||| |||||||||||||| ||||          |||| ||||||| ||||  |||||||||          ||||||||||||||||||| ||||||||||||| ||||  ||||   |  UUUC CAAAAUUUUCUAAA GUUC          UCCC AAAUUUU UAAA  UUCUCUAAA          AUUUUCUCAAAAUUUUCUA AUGUUCUCAAAAA GUUC  AAAA   C  A U    A              C    ---------C    C       C    GA         AAUUUCUCAA                   U             U    UA    UUU UU |
Stem-loop sequence | AAGGGUUUUAAAAGAUUUAUAAGAAAUUUUAAAAGGGUUUUAAAAUAUUUACAAGGGAUUUUAAAAGAGUUUUAAAAGAUUUACAAGAGUUUUUCAAGGGUUUUCUUGUAAAUUCUUUAAAAAUCUUGUAAAAACUCUUGUAUAUCUUUUAAAACUCUUUUAAACUCUUUAAAAAUCUCUUAGAAAUCUUUUAAACCCCUCCUUGCAAAUCUUUUAAAACACUUUU |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
NM_127328.3 |
|
2.5 | Arabidopsis thaliana Cysteine/Histidine-rich C1 domain family protein mRNA | Cysteine/Histidine-rich C1 domain family protein(AT2G17740) | coding protein | psRNATarget |